Block 3 - Register V2

Description

This block batch registers images. Each time you run a batch run of run_script.b (typically would have a different make_scriptR.seed), then run blockFinish to log the results.

Procedure

Set-up

For script, set the ID

ID=312

Ensure make_scriptR.seed is linked to the script you want to run. For starters, you can use one of the default ones. If needed, you can craft something specific and place it in lsupport.

relink.sh support/register-basic01.seed make_scriptR.seed relink.sh script/make_scriptR_02.seed make_scriptR.seed ls -l make_scriptR.seed | tee -a notes

Set-up batch register files

Replace make_script.in with a list of images that you want to use. It is important that the first character is blank and the file is terminated with an "END"

# Create a list of images that need to be processed. echo working with dataset active.$ID | tee -a notes echo y | cp lsupport/active.$ID make_script.in echo END >> make_script.in wc -l make_script.in | tee -a notes

Batch register images

Build the scripts. We use nohup to ensure that if the login window is lost, the process still runs.

make_scriptR nohup sh run_script.b

Monitor progress

ls *.INN | wc ls *.OOT | wc

Check results

This gives stats to help you see which things to work.

registerEval.sh wc eval/evalGood.txt eval/evalBad.txt | tee -a notes

If you so desire, especially early on, make R/B images to see the quality of the fit

evalReg.sh make_script.in

Fix unregistered images

# Fix unregistered images.......

Rerun

If evalBad.txt is large, then you can tweak make_scriptR.seed and rerun on the bad list

cut -c 1-12 evalBad.txt | sed -e "s/^/ /" > make_script.in echo "END" >> make_script.in relink ________.seed make_scriptR.seed echo "Rerunning with evalBad.txt" >> notes ls -l make_scriptR.seed >> notes make_scriptR nohup sh run_script.b

Finish the Block

echo 2 | blockFinish ps$ID

(Compiled by EEP)