Block 3 - Register V0

Description

This block batch registers images contained in newImageList.txt. That file is created by the user, typically by hand. It requires the SPC standards of an "END" at the end of the file and each image should be preceded by a space.

Assumptions

• You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
• You have completed the processing steps in Block 1 - Setup Directory
• You have populated the working directory with new images following the steps in:

  • Block 2 - Ingest

• You have populated lsupport/newImageList.txt with the correct subset of images to register

User inputs

The filename of a list of images to register.

Procedure

1. Initial inputs

imgListName=whatever-list.txt

2. Set-up

# Set-Up
cd /SPC_Test/$testID/$dirID/
script
date
pwd
ls -l

3. Set-up batch register files

# set-up batch register files
ln -s lsupport/$imgListName make_script.in
ln -s scripts/make_scriptR.SEED make_scriptR.seed
make_scriptR
ls -l

4. Batch register images

# Batch register images
register -v
nohup sh run_script.b &

5. Monitor progress

# Monitor progress
ls -l *.INN *.OOT

6. Check results

# Check results
ls *OOT > tmpList
sh support/after.sh 0.5 tmpList
cat goodList 
cat badList
sh support/evalReg.sh badList

7. Fix unregistered images

# Fix unregistered images
.......

8. Clean directory

# Clean directory
sh rem_script.b
rm TESTFILES/*
rm nohup.out

9. Complete procedure

# Block Complete
exit
# Save block log
mv typescript step-reg

(Compiled by DL)

CategoryHowTos