=== 1 Setup Iteration ===
{{{
script

cd test
date
pwd
ls -l

cat support/TAG100.in
ls -l /usr/local/bin/bigmap
/usr/local/bin/bigmap < support/TAG100.in
rm LIST.TXT
cp USED_MAPS.TXT LIST.TXT 
duplicates

cat make_script.in
ls -l /usr/local/bin/MAKE_LMRKLISTX
MAKE_LMRKLISTX
rm make_scriptP.seed
ln -s scripts/make_scriptP.seed make_scriptP.seed
cat make_scriptP.seed
make_scriptP | tee run.sh
ls -l

# Invoke batch iteration
cat INIT_LITHOS.TXT
lithosP -v
nohup sh run.sh &

#since this will take awhile
exit 
#copy typescript file to /SPC_Test/F3H-Lat/test/log

#when finished iterating

#clean landmarks

script

cd test
date
pwd
ls -l

# Check results
find_nofitP | tee log-fitP
sh support/iterateEval.sh
cat logResults.txt 
cat lowImg.txt
cat redo.txt

# Fix uncorrelated images
# Manual correlation as required
}}}
=== 2 User input prior to saving ===
{{{
export gsd=XX #Enter ground sample distance in cm (ex. 20 for 20cm, 05 for 5cm)
export Itnum=XX #Enter iteration number
}}}
=== 3 Save files ===
{{{

# Save bigmap over 50m area
/usr/local/bin/bigmap < lsupport/TAG50.in | tee log-TAG50_${gsd}_${Itnum}cm
echo "TAG150" | SHOWMAP
convert TAG150.pgm TAG150_${gsd}cm_Itnum${Itnum}.jpg
cp TAG150_${gsd}cm_Itnum${Itnum}.jpg ~/send/
convert SIGMAS.pgm TAG150SIGMAS_${gsd}_Itnum${Itnum}.jpg
cp TAG150SIGMAS_${gsd}_Itnum${Itnum}.jpg ~/send/


#Save files
mkdir log/${gsd}cmIt${Itnum}

find_nofitP | tee log/${gsd}cmIt${Itnum}/log-fit
sh support/iterateEval.sh | tee log/${gsd}cmIt${Itnum}/iterateEval-fit
cat evalImg.txt
cat evalLow.txt
cat evalRedo.txt
cat evalOut.txt
cp *INN *OOT run_script*.b evalImg.txt evalLow.txt evalRedo.txt evalOut.txt log/${gsd}cmIt${Itnum}

# Clean directory
sh rem_script.b
rm TESTFILES/*
rm TESTFILES1/*



#copy typescript to /SPC_Test/F3H-Lat/test/log
}}}