WIKI for Bob Gaskell's StereoPC

Email: MailTo(epalmer AT SPAMFREE psi DOT edu)

General Info

Bob doesn't like to comment his code. Thus, I have no clue what some things do. I've been taking pretty good notes, and I thought we could all share and benefit from what we each have learned. If you figure something out (or get help from Bob himself), be sure to post it. If you need help with the wiki, let me know (or just send me the info).

Programs

Lithos

["lithos.e"] - aligns maplets to the current shape model and will provide slight changes to the shape (stored in MAPFILES)

Imager

["map_coverage.e"] - shows the coverage that has been processed by resolution
["coverage.e"] - shows the global coverage that has been processed by resolution

Shaper

["bigmap.e"] - processes maplets to form a bigmap
["update_infiles.e"] - generates a list of landmarks and headers for showing coverage

Utilities

["find_nofit.e"] - searches for alignments that had problems
["make_script.e"] - generates the script that you run to batch align maplets via lithos.e
["export.e"] - builds scripts to package up the new maplets/landmarks into a tar ball
["importl.e"] - builds script to unpack maplets/landmarks and integrate into a master directory
["showmap.e"] - generates an image (.pgm) for a specific bigmap
["pr_template"] - (ignore this)

== Work Flow ==

Files

["view_maps.in"]
["make_scriptT.in"] - Used by ["make_scriptT.e"] to build ["run_script.b"]

CategoryHomepage

-  ⇤ ← Revision 2 as of 2011-11-29 15:58:34 → 
  Size: 463
  Editor: EricPalmer
  Comment:
+   ← Revision 20 as of 2011-11-29 18:12:30 → ⇥
  Size: 1738
  Editor: EricPalmer
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-== WIKI for Bob Gaskell's StereoPC ==
+/!\ This is an important document

(!) Useful stuff


= WIKI for Bob Gaskell's StereoPC =
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-...
+== General Info ==
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-== General Info ==
+Bob doesn't like to comment his code.  Thus, I have no clue what some things do.  I've been taking pretty good notes, and I thought we could all share and benefit from what we each have learned.  If you figure something out (or get help from Bob himself), be sure to post it.  If you need help with the wiki, let me know (or just send me the info).
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 == Programs ==
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+Line 19:
-  === Lithos ===
  lithos.e - aligns maplets to the current shape model and will provide slight changes to the shape (stored in MAPFILES)
+=== Lithos ===
  
 * ["lithos.e"] - aligns maplets to the current shape model and will provide slight changes to the shape (stored in MAPFILES)
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+Line 23:
-  === Utilities === 
find_nofit.e - searches for alignments that had problems
+=== Imager ===
  
 * ["map_coverage.e"] - shows the coverage that has been processed by resolution
 * ["coverage.e"] - shows the '''global''' coverage that has been processed by resolution
-Line 19:
+Line 28:
+=== Shaper ===
  
 * ["bigmap.e"] - processes maplets to form a bigmap
 * ["update_infiles.e"] - generates a list of landmarks and headers for showing coverage

=== Utilities ===
 * ["find_nofit.e"] - searches for alignments that had problems
 * ["make_script.e"] - generates the script that you run to batch align maplets via lithos.e
 * ["export.e"] - builds scripts to package up the new maplets/landmarks into a tar ball
 * ["importl.e"] - builds script to unpack maplets/landmarks and integrate into a master directory
 * ["showmap.e"] - generates an image (.pgm) for a specific bigmap
 * ["pr_template"] - (ignore this)
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+Line 41:
-== Work flow ==
+== Work Flow ==
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+Line 43:
+=== Files ===
 * ["view_maps.in"]
 * ["make_scriptT.in"] - Used by ["make_scriptT.e"] to build ["run_script.b"]