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Deletions are marked like this. | Additions are marked like this. |
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This block batch autoregisters images contained in lsupport/PICTLIST.TXT | This block batch autoregisters images contained in lsupport/PICTLIST.TXT. |
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* You have completed the processing steps in [[How to Test Directory Set-Up - ORIG]] | (./) Need to figure out how we will refer to these (block number? name?) and if they should be links. * You have completed the processing steps in Block 01-01 [[How to Test Directory Set-Up - ORIG]] |
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(./) Need to figure out how to refer to these if they are not all written? And title issues?? * How to Block 02-01 * How to Block 02-02 |
* Block 02-01 How to * Block 02-02 How to |
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* You have registered images listed in lsupport/PICTLIST.TXT-forRegistering.TXT following these steps in How to Block 03-01 | * You have registered images listed in lsupport/PICTLIST.TXT-forRegistering.TXT following these steps in Block 03-01 How to |
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* '''testID''' - Name of the F3 test directory (for example, ''F3E-Limbs'') * '''dirID''' - Name of sub-directory in which to work (e.g. ''orig'', or ''test'') * '''blockID''' - User-specified identifier for typescript textfile name (for example, ''Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages'') |
* '''testID''' - Name of the F3 test directory (for example, 'F3E-Limbs') * '''dirID''' - Name of sub-directory in which to work (e.g. 'orig', or 'test') * '''blockID''' - User-specified identifier for typescript textfile name (for example, 'Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages') |
How to Autoregister Images - Batch V0
Description
This block batch autoregisters images contained in lsupport/PICTLIST.TXT.
Assumptions
- You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
- You are a member of the group OREX\spc
- You have set up a skeleton directory in the following format:
/SPC_Test/F3G-Nav/ ORex/ DATA/ base/ IMAGEFILES/ SHAPEFILES/ lsupport/ orig/ results/ test/
Need to figure out how we will refer to these (block number? name?) and if they should be links.
You have completed the processing steps in Block 01-01 How to Test Directory Set-Up - ORIG
- You have populated the orig/ directory with test-specific images following the steps in:
- Block 02-01 How to
- Block 02-02 How to
- You have populated lsupport/PICTLIST-forRegistering.TXT with the correct subset of images to register
- You have registered images listed in lsupport/PICTLIST.TXT-forRegistering.TXT following these steps in Block 03-01 How to
User inputs
testID - Name of the F3 test directory (for example, 'F3E-Limbs')
dirID - Name of sub-directory in which to work (e.g. 'orig', or 'test')
blockID - User-specified identifier for typescript textfile name (for example, 'Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages')
Procedure
Copy and paste the following lines in the Unix terminal, only changing for your inputs and variances. Comment lines (# or ##) will appear in the typescript output.
# User inputs: testID=F3G-Nav dirID=orig blockID=Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages # Set-Up cd /SPC_Test/$testID/$dirID/ script date pwd ls -l # set-up batch autoregister files cp lsupport/PICTLIST-forRegistering.TXT make_script.in cat make_script.in cp scripts/make_scriptA.seed . cat make_scriptA.seed make_scriptA ls -l # Batch autoregister images ls -l /usr/local/bin/autoregister nohup sh run_script.b & # Monitor progress ls -l *.INN *.OOT # Check results # Since early iterations are not masked - logEval picks up NO CORRS which are later eliminated sh support/logEvalP.sh cat logResults.txt cat lowImg.txt cat redo.txt convert TESTFILES/*.pgm TESTFILES/*.jpg open TESTFILES/*.jpg ## [email protected]: cp TESTFILES/*.jpg ~/send # images inspected on home-machine ## END OF VARIANCE # Fix uncorrelated images ....... # Clean directory sh rem_script.b rm TESTFILES/* rm nohup.out # Block Complete exit # Save block log if [ ! -d /SPC_Test/$testID/log ]; then mkdir /SPC_Test/$testID/log fi mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}
(Compiled by DL)