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| * You have completed the processing steps in Block 01-01 [[How to Test Directory Set-Up - ORIG]] | * You have completed the processing steps in How to Test Directory Set-Up - ORIG |
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| * Block 02-01 How to * Block 02-02 How to |
* Block 02-01 How to Ingest Images - Test-Specific * Block 02-02 How to How to ????????? |
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| Copy and paste the following lines in the Unix terminal, only changing for your inputs and variances. Comment lines (# or ##) will appear in the typescript output. | === 1. Initial inputs === |
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| === 2. Set-up === {{{ |
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| === 3. Set-up batch register files === {{{ |
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=== 4. Batch register images === {{{ |
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| === 5. Monitor progress === {{{ |
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| === 6. Check results === (./) how to handle variance within? Needed? {{{ |
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| === 7. Fix unregistered images === {{{ |
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How to Register Images - Batch V0
Description
This block batch registers images contained in lsupport/PICTLIST.TXT.
Assumptions
- You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
- You are a member of the group OREX\spc
- You have set up a skeleton directory in the following format:
/SPC_Test/F3G-Nav/
ORex/
DATA/
base/
IMAGEFILES/
SHAPEFILES/
lsupport/
orig/
results/
test/
Need to figure out how we will refer to these (block number? name?) and if they should be links. - You have completed the processing steps in How to Test Directory Set-Up - ORIG
- You have populated the orig/ dircteory with test-specific images following the steps in:
- Block 02-01 How to Ingest Images - Test-Specific
- Block 02-02 How to How to ?????????
- You have populated lsupport/PICTLIST-forRegistering.TXT with the correct subset of images to register
User inputs
testID - Name of the F3 test directory (for example, 'F3E-Limbs')
subTestID (if required) - Identifier for sub-test work (for example, 'F3G1')
dirID - Name of sub-directory in which to work (e.g. 'orig', or 'test')
blockID - User-specified identifier for typescript textfile name (for example, 'Block-03-01-Register-Images-F3G-GenericImages')
Procedure
1. Initial inputs
# User inputs:
testID=F3G-Nav
#subTestID=F3G1
#subTestID=F3G2
#subTestID=F3G3
#subTestID=F3G4
#subTestID=F3G5
#subTestID=F3G6
subTestID=F3G7
dirID=test
#blockID=Block-03-01-Register-Images-F3G-GenericImages
blockID=Block-03-01-Register-Images-${subTestID}-Images
2. Set-up
# Set-Up cd /SPC_Test/$testID/$dirID/ script date pwd ls -l
3. Set-up batch register files
# set-up batch register files cp lsupport/PICTLIST-forRegistering.TXT make_script.in cat make_script.in cp scripts/make_scriptR.SEED make_scriptR.seed cat make_scriptR.seed make_scriptR ls -l
4. Batch register images
# Batch register images register -v nohup sh run_script.b &
5. Monitor progress
# Monitor progress ls -l *.INN *.OOT
6. Check results
- how to handle variance within? Needed?
# Check results sh support/logEvalP.sh cat logResults.txt cat lowImg.txt cat redo.txt convert TESTFILES/*.pgm TESTFILES/*.jpg open TESTFILES/*.jpg ## [email protected]: cp TESTFILES/*.jpg ~/send # images inspected on home-machine ## END OF VARIANCE
7. Fix unregistered images
# Fix unregistered images .......
8. Clean directory
# Clean directory sh rem_script.b rm TESTFILES/* rm nohup.out
9. Complete procedure
# Block Complete
exit
# Save block log
if [ ! -d /SPC_Test/$testID/log ]; then
mkdir /SPC_Test/$testID/log
fi
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}
(Compiled by DL)