= How to Register Images - Batch V0 =

== Description ==

This block batch registers images contained in lsupport/PICTLIST.TXT

== Assumptions ==
 * You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
 * You are a member of the group OREX\spc
 * You have set up a skeleton directory in the following format:
{{{
 /SPC_Test/F3G-Nav/
                   ORex/
                            DATA/
                   base/
                            IMAGEFILES/
                            SHAPEFILES/
                   lsupport/
                   orig/
                   results/
                   test/
}}}
 * You have completed the processing steps in [[How to Test Directory Set-Up - ORIG]]
 * You have populated the orig/ dircteory with test-specific images following the steps in:
 (./) Need to figure out how to refer to these if they are not all written? And title issues??
  * How to Block 02-01 
  * How to Block 02-02
 * You have populated lsupport/PICTLIST-forRegistering.TXT with the correct subset of images to register 


== User inputs ==
 * '''testID''' - Name of the F3 test directory (for example, ''F3E-Limbs'')
 * '''subTestID (if required)''' - Identifier for sub-test work (for example, ''F3G1'')
 * '''dirID''' - Name of sub-directory in which to work (e.g. ''orig'', or ''test'')
 * '''blockID''' - User-specified identifier for typescript textfile name (for example, ''Block-03-01-Register-Images-F3G-GenericImages'')

== Procedure ==

Copy and paste the following lines in the Unix terminal, only changing for your inputs and variances. Comment lines (# or ##) will appear in the typescript output.

{{{
# User inputs:
testID=F3G-Nav
#subTestID=F3G1
#subTestID=F3G2
#subTestID=F3G3
#subTestID=F3G4
#subTestID=F3G5
#subTestID=F3G6
subTestID=F3G7
dirID=test
#blockID=Block-03-01-Register-Images-F3G-GenericImages
blockID=Block-03-01-Register-Images-${subTestID}-Images

# Set-Up
cd /SPC_Test/$testID/$dirID/
script
date
pwd
ls -l

# set-up batch register files
cp lsupport/PICTLIST-forRegistering.TXT make_script.in
cat make_script.in
cp scripts/make_scriptR.SEED make_scriptR.seed
cat make_scriptR.seed
make_scriptR
ls -l

# Batch register images
register -v
nohup sh run_script.b &

# Monitor progress
ls -l *.INN *.OOT

# Check results
sh support/logEvalP.sh 
cat logResults.txt 
cat lowImg.txt
cat redo.txt
convert TESTFILES/*.pgm TESTFILES/*.jpg
open TESTFILES/*.jpg
## VARIANCE-dlambert@ORMACSRV1.lpl.arizona.edu:
cp TESTFILES/*.jpg ~/send
# images inspected on home-machine
## END OF VARIANCE

# Fix unregistered images
.......

# Clean directory
sh rem_script.b
rm TESTFILES/*
rm nohup.out

# Block Complete
exit
# Save block log
if [ ! -d /SPC_Test/$testID/log ]; then
  mkdir /SPC_Test/$testID/log
fi
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}

}}}

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''(Compiled by DL)''

CategoryHowTos