The script to change *only* the bigmapA 5cm

sh rem_script.b
logP=log/$ID$Res
mkdir -p $logP
echo nft=$ID > config/nftID
echo res=$Res >> config/nftID





checkVar $ID $Res $logP

bigmap < nftConfig/nftBigmap-$ID-$Res.IN
cd MAPFILES
relink.sh ${ID}${Res}.MAP XXXXXX.MAP
cd ..

grep -Ff USED_MAPS.TXT MAPINFO.TXT | grep "0.0500 m" | cut -c1-6 > make_script.in
echo "END" >> make_script.in
echo "Changing 5 to 6 from the bigmapA for $ID" | tee -a notes
echo -n "number of landmarks +1: " | tee -a notes
wc make_script.in | tee -a notes

relink.sh support/FfiveToSix.seed make_scriptF.seed
make_scriptF
nohup sh run_script.b
finished resetting-5-to-6
find_nofit | tee -a notes

nftBlockFinish.sh nft.$ID