== Autoregister ==
[[autoregister]] adds landmarks to one image at a time.  Contrast that with [[lithos]] that adds images to landmarks.  
 * Once you have a model, you will use [[autoregister]] to add images to the shape model.  You will do this every time new images are collected.
 * [[autoregister]] does not update the topography itself.  You still need to do an iteration to use the new images to build a template and generate topography.
 * When you accept the auto-alignment, SPC will update the spacecraft position and pointing.  This is the same as running [[geometry]], option 2.
 * Look at the LMRK_DISPLAY1.pgm.  How do the image/shape pair look.  Any issues?  If so, you may have to fix them.

Autoregister the new MapCam images of the north pole.
Do the following images (you registered these yesterday)
{{{
M595949305F0
M595949731F0
M595950157F0
M595950583F0
M595951436F0
M595952715F0
M595953568F0
M595953994F0
M595956978F0
M595957405F0
M595959536F0
M595960815F0
}}}

Basic autoregister cookbook:
 * autoregister
 * <imageName>
 * y - add images
 * 0.5 
 * n 

 * n - eliminate new
 * 0,50,.25,0,5 - criteria (notice there is one fewer parameter)

 * 1 - auto align
 * 2 - spacing
 * n - no new spacing
 * 0 - continue
 * y - accept changes (this will update the spacecraft pointing and position)

 * 1 - auto align
 * 1 - spacing
 * n - no new spacing
 * 0 - continue
 * y - accept changes (this will update the spacecraft pointing and position)

 * o - eliminate by correlation
 * .5 - Correlation value

 * 1 - auto align
 * 1 - spacing
 * n - no new spacing
 * 0 - continue
 * y - accept changes (this will update the spacecraft pointing and position and only use the remaining correlated images)

 * 4 - change flags
 * b - use all (this sets each image to be used when building a template)
 * 0 - end
 * q
END



== Tile a bigmap ==
Here you will tile the TAG site (Touch and Go site - where the spacecraft is planning on collecting a sample).  We will do this in batch mode using make_scriptT.  This uses a bigmap of the TAG site.  The routine will put a new maplet every 50 pixels within the bigmap, and when it is done, it will have tile the entire area with a 30% overlap.

Key differences between tiling using a bigmap and tiling using lat/lon
 * The position definition is based upon a reference bigmap 
 * We use the topography of the bigmap 

 Name this file script/make_scriptT_bigmap.in
 {{{
XXXXXX
scripts/XXX075.SEED
      50  150
     100  150
     150  150
      50  100
     100  100
     150  100
      50   50
     100   50
     150   50
END
 }}}


Cookbook for this task:
 * Create the make_scriptT_bigmap.in in the scripts directory
 * Make a symbolic link 
  {{{ ln -s scripts/make_scriptT_bigmap.in make_scriptT.in}}}
 * Copy the TILE00.MAP file into your MAPFILES directory.  Normally, you'd create this yourself, but to save time and make things straight forward, I created it for you.  It is almost exactly like the bigmap MTAG15 that you created yesterday, but the resolution has been selected to make correctly spaced maplets.  [[attachment:TILE00.MAP]]
 * Make a symbolic link from TILE00.MAP to XXXXXX.MAP in the MAPFILES directory
  {{{
  cd MAPFILES
  ln -s TILE00.MAP XXXXXX.MAP
  }}}
 * Double check all of your files.  Running showmap on XXXXXX is a useful way to check that you have the right map installed.
  {{{
  head make_scriptT.in
  head scripts/XXX075.SEED
  echo XXXXXX | showmap
  convert XXXXXX.pgm xxxxxx.jpg; open xxxxxx.jpg
  }}}
 * In the working directory, run make_scriptT
 * Review the output.  You should see nine INN files.  Check the file to see that it is correct
 * Run the run_script.b and monitor
  {{{
  nohup sh run_script.b &
  find_nofitT
  }}}
 * When complete, rebuild the bigmap MTAG15
  {{{
   bigmap < lsupport/MTAG15.in
   echo MTAG15 | showmap
   convert MTAG15.pgm mtag15.jpg; open mtag15.jpg
  }}}

 * Check the create coverage of the newly created maplets using map_coverage.  The first time, we are looking only at the 75m landmark.  The second time, it is showing all landmarks (technically all landmarks between 0 and 150cm).
 {{{
map_coverage
MTAG15
0 .00075
convert coverage_m.pgm 75.jpg; open 75.jpg
map_coverage
MTAG15
0 .00015
convert coverage_m.pgm 150.jpg; open 150.jpg
} }}}