In some cases the initial topography is so poor that the images won't align. If you are tiling the script will throw out all images, then delete the landmark since there are no images. Other times there just are not enough common features in the images for you to determine how to manually align the images. Here is how to fix that problem.
If the landmark was deleted, you'll need to grab the initial part of the INN file and paste that into LITHOS. You'll want to paste in everything before the first auto-align (i.e. 1-0-1). If the landmark wasn't deleted than you can just load the landmark like normal.
The basic steps will be as follows: 1. Zoom out enough that you can see features to which you can align. 2.