= Block 2 - Ingest V0 =

 (./) Copied over from working--needs to be more general.

= Edited by Kristofer Drozd to suit F3E-Limbs =

== Description ==

This block additionally populates the F3 orig directory's IMAGEFILES/NOMINALS/ and SUMFILES/ sub-directories with Detailed Survey image files which are consistent across sub-tests in readiness for registering Detailed Survey images.


== Assumptions ==
 * You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
 * You are a member of the group OREX\spc
 * You have set up a skeleton directory in the following format:
{{{
 /SPC_Test/F3G-Nav/
                   ORex/
                            DATA/
                   base/
                            IMAGEFILES/
                            SHAPEFILES/
                   lsupport/
                   orig/
                   results/
                   test/
}}}
 (./) Need to figure out how we will refer to these and if they should be links. I only linked this one as a sample to see!
 * You have completed the processing steps in [[Block 1 - Setup Directory V0]]


== User inputs ==
 * '''testID''' - Name of the F3 test directory (for example, 'F3E-Limbs')
 * '''blockID''' - User-specified identifier for typescript textfile name (for example, 'Block-02-01-IngestImages-TestSpecific')

== Procedure ==
=== 1. Initial inputs ===

{{{
# User inputs:
testID=F3E-Limbs
blockID=Block-02-01-IngestImages-TestSpecific
}}}

=== 2. Set-up ===
{{{
# Set-Up
cd /SPC_Test/$testID
script
date
pwd
ls -l
}}}

=== 3. Populate sub-directories ===
{{{
# Populate base/IMAGEFILES/ with Detailed Survey test image files
rsync -ha img_gen/IMAGEFILES/* base/IMAGEFILES/
ls -l base/IMAGEFILES/

# Populate orig/NOMINALS/ with Detailed Survey MapCam image nominals
rsync -ha img_gen/F3Ev1perturbed/DirtyNominalsF3E0v1/* orig/NOMINALS/
rsync -ha img_gen/F3Ev1perturbed/DirtyNominalsF3E1v1/* orig/NOMINALS/
rsync -ha img_gen/F3Ev1perturbed/DirtyNominalsF3E2v1/* orig/NOMINALS/
rsync -ha img_gen/F3Ev1perturbed/DirtyNominalsF3E3v1/* orig/NOMINALS/
rsync -ha img_gen/F3Ev1perturbed/DirtyNominalsF3E4v1/* orig/NOMINALS/
ls -l orig/NOMINALS

# Populate orig/SUMFILES/ with Detailed Survey MapCam image sumfiles
rsync -ha img_gen/F3Ev1perturbed/DirtySumfilesF3E0v1/* orig/SUMFILES/
rsync -ha img_gen/F3Ev1perturbed/DirtySumfilesF3E1v1/* orig/SUMFILES/
rsync -ha img_gen/F3Ev1perturbed/DirtySumfilesF3E2v1/* orig/SUMFILES/
rsync -ha img_gen/F3Ev1perturbed/DirtySumfilesF3E3v1/* orig/SUMFILES/
rsync -ha img_gen/F3Ev1perturbed/DirtySumfilesF3E4v1/* orig/SUMFILES/
ls -l orig/SUMFILES
}}}
 


=== 4. Generate PICTLIST.TXT file ===
{{{
# Generate lsupport/PICTLISTF3Elow.txt which the PICTLIST.TXT for the low stereo prep directory
ls base/IMAGEFILES/M* | cut -d '/' -f 3 | cut -d '.' -f 1 > lsupport/PICTLISTF3Elow.txt
ls base/IMAGEFILES/P59* | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Elow.txt
ls img_gen/IMAGEFILES/P1F3E05H0001 | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Elow.txt
ls img_gen/IMAGEFILES/P1F3E05H0002 | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Elow.txt
ls img_gen/IMAGEFILES/P1F3E05H0003 | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Elow.txt
ls img_gen/IMAGEFILES/P1F3E05H0004 | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Elow.txt
sed -i -e 's/^/ /' lsupport/PICTLISTF3Elow.txt
echo END >> lsupport/PICTLISTF3Elow.txt

# Generate lsupport/PICTLISTF3Elow_1.txt which the PICTLIST.TXT for the low stereo sub test 1 prep directory
cp lsupport/PICTLISTF3Elow.txt support/PICTLISTF3Elow_1.txt
ls img_gen/IMAGEFILES/P1F3E1* | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Elow_1.txt
sed -i -e 's/^/ /' lsupport/PICTLISTF3EhiPICTLISTF3Elow_1.txt
echo END >> lsupport/PICTLISTF3Elow_1.txt

# Generate lsupport/PICTLISTF3Elow_2.txt which the PICTLIST.TXT for the low stereo sub test 2 prep directory
cp lsupport/PICTLISTF3Elow.txt support/PICTLISTF3Elow_2.txt
ls img_gen/IMAGEFILES/P1F3E2* | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Elow_2.txt
sed -i -e 's/^/ /' lsupport/PICTLISTF3EhiPICTLISTF3Elow_2.txt
echo END >> lsupport/PICTLISTF3Elow_2.txt

# Generate lsupport/PICTLISTF3Elow_3.txt which the PICTLIST.TXT for the low stereo sub test 3 prep directory
cp lsupport/PICTLISTF3Elow.txt support/PICTLISTF3Elow_3.txt
ls img_gen/IMAGEFILES/P1F3E3* | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Elow_3.txt
sed -i -e 's/^/ /' lsupport/PICTLISTF3EhiPICTLISTF3Elow_3.txt
echo END >> lsupport/PICTLISTF3Elow_3.txt

# Generate lsupport/PICTLISTF3Elow_4.txt which the PICTLIST.TXT for the low stereo sub test 3 prep directory
cp lsupport/PICTLISTF3Elow.txt support/PICTLISTF3Elow_4.txt
ls img_gen/IMAGEFILES/P1F3E4* | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Elow_4.txt
sed -i -e 's/^/ /' lsupport/PICTLISTF3EhiPICTLISTF3Elow_4.txt
echo END >> lsupport/PICTLISTF3Elow_4.txt

# Generate lsupport/PICTLISTF3Ehigh.txt which the PICTLIST.TXT for the high stereo prep directory
ls base/IMAGEFILES/M* | cut -d '/' -f 3 | cut -d '.' -f 1 > lsupport/PICTLISTF3Ehigh.txt
ls base/IMAGEFILES/P59* | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Ehigh.txt
ls img_gen/IMAGEFILES/P1F3E05H0005 | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Ehigh.txt
ls img_gen/IMAGEFILES/P1F3E05H0006 | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Ehigh.txt
ls img_gen/IMAGEFILES/P1F3E05H0007 | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Ehigh.txt
ls img_gen/IMAGEFILES/P1F3E05H0008 | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Ehigh.txt
sed -i -e 's/^/ /' lsupport/PICTLISTF3Ehigh.txt
echo END >> lsupport/PICTLISTF3Ehigh.txt

# Generate lsupport/PICTLISTF3Ehigh_1.txt which the PICTLIST.TXT for the high stereo sub test 1 prep directory
cp lsupport/PICTLISTF3Ehigh.txt support/PICTLISTF3Ehigh_1.txt
ls img_gen/IMAGEFILES/P1F3E1* | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Ehigh_1.txt
sed -i -e 's/^/ /' lsupport/PICTLISTF3EhiPICTLISTF3Ehigh_1.txt
echo END >> lsupport/PICTLISTF3Ehigh_1.txt

# Generate lsupport/PICTLISTF3Ehigh_2.txt which the PICTLIST.TXT for the high stereo sub test 2 prep directory
cp lsupport/PICTLISTF3Ehigh.txt support/PICTLISTF3Ehigh_2.txt
ls img_gen/IMAGEFILES/P1F3E2* | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Ehigh_2.txt
sed -i -e 's/^/ /' lsupport/PICTLISTF3EhiPICTLISTF3Ehigh_2.txt
echo END >> lsupport/PICTLISTF3Ehigh_2.txt

# Generate lsupport/PICTLISTF3Ehigh_3.txt which the PICTLIST.TXT for the high stereo sub test 3 prep directory
cp lsupport/PICTLISTF3Ehigh.txt support/PICTLISTF3Ehigh_3.txt
ls img_gen/IMAGEFILES/P1F3E3* | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Ehigh_3.txt
sed -i -e 's/^/ /' lsupport/PICTLISTF3EhiPICTLISTF3Ehigh_3.txt
echo END >> lsupport/PICTLISTF3Ehigh_3.txt

# Generate lsupport/PICTLISTF3Ehigh_4.txt which the PICTLIST.TXT for the high stereo sub test 4 prep directory
cp lsupport/PICTLISTF3Ehigh.txt support/PICTLISTF3Ehigh_4.txt
ls img_gen/IMAGEFILES/P1F3E4* | cut -d '/' -f 3 | cut -d '.' -f 1 >> lsupport/PICTLISTF3Ehigh_4.txt
sed -i -e 's/^/ /' lsupport/PICTLISTF3EhiPICTLISTF3Ehigh_4.txt
echo END >> lsupport/PICTLISTF3Ehigh_4.txt
}}}


=== 5. Generate list of images needing registering/autoregistering ===

Simply make these text files any way that is desired and have them in the support directory.

High stereo image registering text file (highRegistering.txt):
{{{
 P1F3E05H0005
 P1F3E05H0006
 P1F3E05H0007
 P1F3E05H0008
END
}}}

Low stereo image registering text file (lowRegistering.txt):
{{{
 P1F3E05H0001
 P1F3E05H0002
 P1F3E05H0003
 P1F3E05H0004
END
}}}

100cm limb image registering text file (F3E1Registering.txt):
{{{
 P1F3E15H0001
 P1F3E25H0002
 P1F3E35H0003
 P1F3E45H0004
END
}}}

50cm limb image registering text file (F3E2Registering.txt):
{{{
 P1F3E25H0001
 P1F3E25H0002
 P1F3E25H0003
 P1F3E25H0004
END
}}}

15cm limb image registering text file (F3E3Registering.txt):
{{{
 P1F3E35H0001
 P1F3E35H0002
 P1F3E35H0003
 P1F3E35H0004
END
}}}

5cm limb image registering text file (F3E4Registering.txt):
{{{
 P1F3E45H0001
 P1F3E45H0002
 P1F3E45H0003
 P1F3E45H0004
END
}}}

=== 6. Complete procedure ===
{{{
# Block Complete
exit
# Save block log
if [ ! -d /SPC_Test/$testID/log ]; then
  mkdir /SPC_Test/$testID/log
fi
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}
}}}

----------

''(Compiled by DL)''

CategoryHowTos