## page was renamed from Test F3E Block 5 - Iterate
= Test F3E Iterate =


== Description ==

This block iterates a set of landmarks specified by the user, using the [[lithosP]]
options contained in the file /SPC_Test/F3-base/base/scripts.make_scriptP.seed.

== Assumptions ==
 * You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
 * You are a member of the group OREX\spc
 * You have set up a skeleton directory in the following format:

 * You have completed the processing steps in Block 1 - Setup Directory

== User inputs ==

== Procedure ==

=== 1. Initial Inputs ===

{{{
# User inputs:
}}}

=== 2. Set-up ===
{{{
# Set-Up
cd /SPC_Test/workingDirectory
script
date
pwd
ls -l
}}}

=== 3. Set-up batch iteration files ===

==== Scenario - Full list of landmarks ====

{{{
# Set-up batch iteration files
## SCENARIO 1: Iterate all landmarks lised in LMRKLIST.TXT
cp LMRKLIST.TXT LIST.TXT
duplicates 
## END OF SCENARIO 1
}}}

==== Scenario - Recently Tiled ====
{{{
## SCENARIO 2: Iterate landmarks that were just created by tiling 
cp LMRKLIST1.TXT LIST.TXT
duplicates 
## END OF SCENARIO 2
}}}


==== Scenario - List of landmarks from a region (BIGMAP) ====
{{{
## SCENARIO 3: Iterate landmarks which overlap a region-of-interest defined via a bigmap .in file
## TAG100.in is a 100m x 100m region around the center of TAG site 1
cat lsupport/TAG100.in
ls -l /usr/local/bin/bigmap
bigmap < lsupport/TAG100.in
cp USED_MAPS.TXT LIST.TXT 
duplicates
## END OF SCENARIO 3
}}}

==== Finish Setup ====

{{{
cat make_script.in
ls -l /usr/local/bin/MAKE_LMRKLISTX
MAKE_LMRKLISTX 
cp scripts/make_scriptP.seed .
cat make_scriptP.seed
make_scriptP | tee run.sh
ls -l
}}}

=== 4. Invoke batch iteration ===
{{{

# Invoke batch iteration
cat INIT_LITHOS.TXT
lithosP -v
nohup sh run.sh &
}}}

=== 5. Monitor progress ===
{{{
# Monitor progress
ls
ls -l *.INN *.OOT
find_nofitP
sh support/logEvalP.sh
}}}

=== 6. Check results ===

{{{

# Check results
find_nofitP | tee log-fitP
sh support/logEvalP.sh
cat logResults.txt 
cat lowImg.txt
cat redo.txt
}}}


=== 8. Clean directory ===
{{{
# Clean directory
sh rem_script.b
rm TESTFILES/*
rm TESTFILES1/*
}}}

=== 9. Complete procedure ===
{{{
# Block Complete
exit
# Save block log
mv typescript <newname>

}}}

----------

''(Compiled by DL)''

CategoryHowTos