Block-1A - TEST DIRECTORY SET-UP - ORIG

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##                                                                      ##
##                               BLOCK 1A                               ##
##                     TEST DIRECTORY SET-UP - ORIG                     ##                        
##                                                                      ##
##########################################################################


## This block populates an F3 test directory from the F3-base directory 
## It clears and re-syncs the working directory (orig); adds links to 
## App and PS images in the imagefiles directory (base/IMAGEFILES);
## and syncs the shapefiles directory (base/SHAPEFILES)
## in readiness for sensitivity testing

## Assumptions:
## User has invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
## User is a member of the group OREX\spc
## User has set up a skeleton directory in the following format:
## /SPC_Test/F3G-Nav/
##                   base/
##                            IMAGEFILES/
##                            SHAPEFILES/
##                   lsupport/
##                            PICTLIST.TXT
##                   orig/
##                   results/
##                   test/

## User inputs:
## testID: Name of the F3 test directory (for example, F3E-Limbs)
## blockID: User-specified identifier for typescript textfile name 
##          (for example, Block-1A-TestDirSetUp-Orig)

# User inputs:
export testID=F3G-Nav
export blockID=Block-1A-TestDirSetUp-Orig

# Set-Up
cd /SPC_Test/$testID
script

# Display user inputs
echo $testID
echo $blockID

date
pwd
ls -l

## ORIG
# sync to F3-base/orig directory
rsync --delete -ha ../F3-base/orig .

## VARIANCE: F3G - Organisation of lsupport directory and PICTLIST
echo END > lsupport/PICTLIST_orig.TXT
rm -r orig/lsupport
ln -s ../lsupport/ orig/lsupport
rm orig/PICTLIST.TXT
ln -s lsupport/PICTLIST_orig.TXT orig/PICTLIST.TXT
## END OF VARIANCE

# print details
ls -l orig
cat orig/README

## base/IMAGEFILES
# Link to App and PS Images contained in F3-base directory

ls /SPC_Test/F3-base/base/IMAGEFILES/M59* | cut -d '.' -f 1 | rev | cut -d '/' -f 1 | rev > lsupport/listImagesF3base
ls /SPC_Test/F3-base/base/IMAGEFILES/P59* | cut -d '.' -f 1 | rev | cut -d '/' -f 1 | rev >> lsupport/listImagesF3base

while read line; do
ln -s /SPC_Test/F3-base/base/IMAGEFILES/${line}.DAT base/IMAGEFILES/${line}.DAT
done < lsupport/listImagesF3base

cp /SPC_Test/F3-base/base/IMAGEFILES/README base/IMAGEFILES/

# print details
ls -l base/IMAGEFILES
cat base/IMAGEFILES/README

## Update orig/PICTLIST.TXT
ls base/IMAGEFILES/M* | cut -d '/' -f 3 | cut -d '.' -f 1 > orig/PICTLIST.TXT
ls base/IMAGEFILES/P* | cut -d '/' -f 3 | cut -d '.' -f 1 >> orig/PICTLIST.TXT
sed -i -e 's/^/ /' orig/PICTLIST.TXT 
echo END >> orig/PICTLIST.TXT
cat orig/PICTLIST.TXT

## base/SHAPEFILES
# sync F3-base/base/SHAPEFILES directory
rsync --delete -ha /SPC_Test/F3-base/base/SHAPEFILES/ base/SHAPEFILES/
# print details
ls -l base/SHAPEFILES/
cat base/SHAPEFILES/README 

# Block Complete
date
exit

# Save block log
if [ ! -d /SPC_Test/$testID/log ]; then
  mkdir /SPC_Test/$testID/log
fi

# OPTION 1: OVERWRITE TYPESCRIPT LOG
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}
# END OF OPTION 1

# OPTION 2: APPEND TYPESCRIPT LOG
cat typescript >> /SPC_Test/$testID/log/log-typescript-${blockID}
# END OF OPTION 2