Block-2B - INGEST IMAGES - SUB-TEST-SPECIFIC

##########################################################################
##                                                                      ##
##                               BLOCK 2B                               ##
##                   INGEST IMAGES - SUB-TEST-SPECIFIC                  ##
##                                                                      ##
##########################################################################

## This block additionally populates the F3 test directory's IMAGEFILES/
## NOMINALS/ and SUMFILES/ sub-directories with Detailed Survey image files 
## which are specific to a sub-test in readiness for registering the images


## Assumptions:
## User has invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
## User is a member of the group OREX\spc
## User has set up a skeleton directory in the following format:
## /SPC_Test/F3G-Nav/
##                   ORex/
##                            DATA/
##                   base/
##                            IMAGEFILES/
##                            SHAPEFILES/
##                   lsupport/
##                   orig/
##                   results/
##                   test/
## User has completed the processing steps comprising Block 1A - TEST DIRECTORY 
## SET-UP - ORIG
## User has set up the test sub-directory, as per Block 1B - TEST DIRECTORY 
## SET-UP - TEST

## User inputs:
## testID: Name of the F3 test directory (for example, F3E-Limbs)
## subTestID: (if required) Identifier for sub-test work (for example, F3G1)
## dirID: Name of sub-directory in which to work (e.g. orig, or test)
## blockID: User-specified identifier for typescript textfile name 
##          (for example, Block-2B-IngestImages-SubTestSpecific-F3G1)

# User inputs:
export testID=F3G-Nav
#export subTestID=F3G1
export subTestID=F3G2
#export subTestID=F3G3
#export subTestID=F3G4
#export subTestID=F3G5
#export subTestID=F3G6
#export subTestID=F3G7
export dirID=test
export blockID=Block-2B-IngestImages-SubTestSpecific-${subTestID}

# Set-Up
cd /SPC_Test/$testID
script

# Display user inputs
echo $testID
echo $subTestID
echo $dirID
echo $blockID

date
pwd
ls -l


## VARIANCE-F3G:

# Populate base/IMAGEFILES/ with sub-test Detailed Survey test image files
# Step completed in Block 2A - Ingest Images - Test-Specific

ls -l base/IMAGEFILES/

# Populate test/NOMINALS/ with sub-test Detailed Survey test image nominals

ls /SPC_Test/$testID/base/$subTestID/NOMINALS/P60* | cut -d '.' -f 1 | rev | cut -d '/' -f 1 | rev > lsupport/listImagesG2andG3PolyCam
cat lsupport/listImagesG2andG3PolyCam

cat base/$subTestID/NOMINALS/README
while read line; do
ln -s ../../base/$subTestID/NOMINALS/${line}.NOM $dirID/NOMINALS/${line}.NOM
done < lsupport/listImagesG2andG3PolyCam
ls -l $dirID/NOMINALS

# Populate orig/SUMFILES/ with Detailed Survey test image sumfiles

cat base/$subTestID/SUMFILES/README
while read line; do
ln -s ../../base/$subTestID/SUMFILES/${line}.SUM $dirID/SUMFILES/${line}.SUM
done < lsupport/listImagesG2andG3PolyCam
ls -l $dirID/SUMFILES

## END OF VARIANCE

# Update test/PICTLIST.TXT
sed '$d' test/PICTLIST.TXT > TEMP1.TXT
ls base/IMAGEFILES/P60* | cut -d '/' -f 3 | cut -d '.' -f 1 > TEMP2.TXT
sed -i -e 's/^/ /' TEMP2.TXT
cat TEMP1.TXT > test/PICTLIST.TXT
cat TEMP2.TXT >> test/PICTLIST.TXT
echo END >> test/PICTLIST.TXT
rm TEMP1.TXT TEMP2.TXT
cat test/PICTLIST.TXT

# Generate list of images which require registering/autoregistering

# VARIANCE-F3G:
# DS PolyCam images within the region-of-interest only.
awk '/P60/ { print $1 }' lsupport/listG2PolyCamImagesIn100mRegionCenteredOnTAG1 > lsupport/listImagesForRegistering
awk '/P60/ { print $1 }' lsupport/listG3PolyCamImagesIn100mRegionCenteredOnTAG1 >> lsupport/listImagesForRegistering
sed -i -e 's/^/ /' lsupport/listImagesForRegistering
echo END >> lsupport/listImagesForRegistering
## END OF VARIANCE

cat lsupport/listImagesForRegistering

# Block Complete
date
exit

# Save block log
if [ ! -d /SPC_Test/$testID/log ]; then
  mkdir /SPC_Test/$testID/log
fi

# OPTION 1: OVERWRITE TYPESCRIPT LOG
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}
# END OF OPTION 1

# OPTION 2: APPEND TYPESCRIPT LOG
cat typescript >> /SPC_Test/$testID/log/log-typescript-${blockID}
# END OF OPTION 2