Block-03-01 - REGISTER IMAGES - BATCH

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##                                                                      ##
##                             BLOCK 03-01                              ##
##                       REGISTER IMAGES - BATCH                        ##
##                                                                      ##
##########################################################################

## This block batch registers images contained in lsupport/PICTLIST.TXT

## Assumptions:
## User has invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
## User is a member of the group OREX\spc
## User has set up a skeleton directory in the following format:
## /SPC_Test/F3G-Nav/
##                   ORex/
##                            DATA/
##                   base/
##                            IMAGEFILES/
##                            SHAPEFILES/
##                   lsupport/
##                   orig/
##                   results/
##                   test/
## User has completed the processing steps comprising Block 01-01 - TEST DIRECTORY
## SET-UP - ORIG
## User has additionally populated the orig/ dircteory with test-specific images as per 
## Block 02-01 / 02-02
## User has populated lsupport/PICTLIST-forRegistering.TXT with the correct subset of 
## images to register 

## User inputs:
## testID: Name of the F3 test directory (for example, F3E-Limbs)
## subTestID: (if required) Identifier for sub-test work (for example, F3G1)
## dirID: Name of sub-directory in which to work (e.g. orig, or test)
## blockID: User-specified identifier for typescript textfile name 
##          (for example, Block-03-01-Register-Images-F3G-GenericImages)

# User inputs:
testID=F3G-Nav
#subTestID=F3G1
#subTestID=F3G2
#subTestID=F3G3
#subTestID=F3G4
#subTestID=F3G5
#subTestID=F3G6
subTestID=F3G7
dirID=test
#blockID=Block-03-01-Register-Images-F3G-GenericImages
blockID=Block-03-01-Register-Images-${subTestID}-Images

# Set-Up
cd /SPC_Test/$testID/$dirID/
script
date
pwd
ls -l

# set-up batch register files
cp lsupport/PICTLIST-forRegistering.TXT make_script.in
cat make_script.in
cp scripts/make_scriptR.SEED make_scriptR.seed
cat make_scriptR.seed
make_scriptR
ls -l

# Batch register images
register -v
nohup sh run_script.b &

# Monitor progress
ls -l *.INN *.OOT

# Check results
sh support/logEvalP.sh 
cat logResults.txt 
cat lowImg.txt
cat redo.txt
convert TESTFILES/*.pgm TESTFILES/*.jpg
open TESTFILES/*.jpg
## [email protected]:
cp TESTFILES/*.jpg ~/send
# images inspected on home-machine
## END OF VARIANCE

# Fix unregistered images
.......

# Clean directory
sh rem_script.b
rm TESTFILES/*
rm nohup.out

# Block Complete
exit
# Save block log
if [ ! -d /SPC_Test/$testID/log ]; then
  mkdir /SPC_Test/$testID/log
fi
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}