##pdf footerleft t
##pdf no-links unchecked
##pdf extra-titleauthor Planetary Science Institute
##pdf extra-dynamiccodeblock unchecked
##pdf pagemode document
##pdf headfootsize 10.5
##pdf size letter
##pdf style book
##pdf permissionprint unchecked
##pdf footermiddle .
##pdf firstpage p1
##pdf permissionmodify unchecked
##pdf toclevels 1
##pdf tocheadermiddle .
##pdf extra-dynamiccodeblock-break unchecked
##pdf extra-codeblocklinenumbers unchecked
##pdf permissioncopy unchecked
##pdf extra-dynamiccodeblock-middot unchecked
##pdf footerright 1
##pdf headerleft h
##pdf fontsize 10.5
##pdf jpeg 100
##pdf extra-titlecopyright Copyright 2016 Planetary Science Institute
##pdf headerright .
##pdf headingfont sans-boldoblique
##pdf numbered unchecked
##pdf bodyfont helvetica
##pdf extra-titledocnumber 1.00A
##pdf tocfooterleft t
##pdf titletext SPC Software User Manual
##pdf permissionannotate unchecked

## frontmatter
<<Include(Introduction)>>
## may need to put in another piece or two

= PART I. OVERVIEW =
## Part I Overview
<<Include(spc_overview)>>

= PART II. HOW TOS =
## Part II How Tos
<<Include(stage1_description)>>
<<Include(stage2_description)>>
<<Include(stage3_description)>>
<<Include(Block 1 - Setup Directory V0)>>
<<Include(Block 2 - Ingest V0)>>
<<Include(Block 3 - Register V0)>>
<<Include(Block 4 - Autoregister V0)>>
<<Include(Block 5 - Iterate V0)>>
<<Include(Block 6A - Lat/Lon Tiling V0)>>
<<Include(Block 6B - Bigmap Tiling V0)>>
<<Include(Block 7 - Clean V0)>>

= PART III. REFERENCE =
= Programs =
## Part III Reference Entries
<<Include(autoregister)>>
<<Include(autoregisterP)>>
<<Include(bigmap)>>
<<Include(bigmapL)>>
<<Include(blemishes)>>
<<Include(densify)>>
<<Include(densifyA)>>
<<Include(duplicates)>>
<<Include(dynamics)>>
<<Include(Export_Import)>>
<<Include(find_nofit)>>
<<Include(find_nofitP)>>
<<Include(find_nofitT)>>
<<Include(geometry)>>
<<Include(lithos)>>
<<Include(lithosP)>>
<<Include(make_list)>>
<<Include(make_lmrklistX)>>
## moved this in here before scripts as it seems more logical
<<Include(Script Makers Overview)>>
<<Include(make_sriptA)>>
<<Include(make_scriptAP)>>
<<Include(make_scriptF)>>
<<Include(Make_scriptP)>>
<<Include(make_scriptR)>>
<<Include(make_scriptT)>>
<<Include(Make_sumfiles)>>
<<Include(make_tilefile)>>
<<Include(MAKE_TILES)>>
<<Include(MAKE_TILESP)>>
<<Include(map_coverage)>>
<<Include(pole)>>
<<Include(process_fits)>>
<<Include(register)>>
<<Include(regres)>>
<<Include(rem_done)>>
<<Include(residuals)>>
## this is where script makers overview is alphabetically
<<Include(shape_info)>>
<<Include(shift)>>
<<Include(spheremapsB)>>
## Lithos Menu Options
## This may need to be nested in Lithos or somehow slipped in between there??
<<Include(Find template)>>
<<Include(Align landmarks)>>
<<Include(Find heights)>>
<<Include(Attach map to maps or limbs)>>
<<Include(Input landmark)>>
<<Include(Update landmark files)>>
<<Include(Create new landmark)>>
<<Include(Replicate or Rename landmark)>>
<<Include(Change_scale_qsz_or_orientation)>>
<<Include(Turn on rename)>>
<<Include(Find normal)>>
<<Include(Find_V_Z_or_PTG)>>
<<Include(Reset albedo or slopes)>>
<<Include(Get heights from shape model)>>
<<Include(Get heights from surrounding map)>>
<<Include(Turn on extract filter)>>
<<Include(Delete or Disconnect landmark)>>
<<Include(Eliminate pictures from landmark)>>
<<Include(Picture status)>>
<<Include(Turn off picture restriction)>>
<<Include(Find maplets containing surface point)>>
<<Include(Use zoom display)>>
<<Include(Hide screen output)>>
= Directories =
## Directories
<<Include(BIGFILES)>>
<<Include(DATA)>>
<<Include(IMAGEFILES)>>
<<Include(LMKFILES)>>
<<Include(MAPFILES)>>
<<Include(NOMINALS)>>
<<Include(SHAPEFILES)>>
<<Include(SUMFILES)>>
<<Include(TESTFILES)>>
<<Include(TESTFILES1)>>
<<Include(UTILITIES)>>
= Files =
= Input Files =
## INPUT FILES
<<Include(BIGMAP.IN)>>
<<Include(BIGLIST.IN)>>
<<Include(DYNAMICS.TXT)>>
<<Include(IFRAME.TXT)>>
<<Include(INIT_LITHOS.TXT)>>
<<Include(LIMBLIST1.TXT)>>
<<Include(LMRKLIST.TXT)>>
<<Include(LMRKLIST1.TXT)>>
<<Include(LMRKLISTO.TXT)>>
<<Include(LMRKLISTR.TXT)>>
<<Include(LMRKLISTX.TXT)>>
<<Include(make_sumfiles.in)>>
<<Include(make_sumfiles.txt)>>
<<Include(MAPLIST.TXT)>>
<<Include(PICTLISTR.TXT)>>
<<Include(PICTLIST.TXT)>>
<<Include(PICTLISTS.TXT)>>
<<Include(PICTLISTX.TXT)>>
<<Include(PICTLISTRX.TXT)>>
= Output Files =
## OUTPUT FILES
<<Include(check.txt)>>
<<Include(EMPTY.TXT)>>
<<Include(FLATLIST.TXT)>>
<<Include(INSIDE.TXT)>>
<<Include(LIMINFO.TXT)>>
<<Include(LMKVECS.TXT)>>
<<Include(MAPCHK.TXT)>>
<<Include(MAPINFO.TXT)>>
<<Include(MAPRES.TXT)>>
<<Include(New_Limbs.in)>>
<<Include(NEW_LIST.TXT)>>
<<Include(no_update.txt)>>
<<Include(OVERLAPS.TXT)>>
<<Include(PICINFO.TXT)>>
<<Include(PRUNE.TXT)>>
<<Include(RANGES_SOLVED.TXT)>>
<<Include(redo.txt)>>
<<Include(REMOVED.TXT)>>
<<Include(RESIDUALS.TXT)>>
<<Include(SHAPE.TXT)>>
<<Include(SIGMAS.TXT)>>
<<Include(SIGMA.TXT)>>
<<Include(USED_MAPS.TXT)>>
<<Include(USED_PICS.TXT)>>
<<Include(veto.txt)>>

= Support Files =
## SUPPORT FILES
<<Include(make_script.in)>>
<<Include(make_scriptA.seed)>>
<<Include(make_scriptAP.seed)>>
<<Include(make_scriptF.seed)>>
<<Include(make_scriptP.seed)>>
<<Include(make_scriptR.seed)>>
<<Include(make_scriptT.in)>>
<<Include(make_scriptT.seed)>>