= densify = ||Category B||Version 3.0|| == Description == This program is used to increase the resolution of a shape model by interpolating heights between landmarks. '''densify''' first constructs a reference surface by interpolating the surface points of a lower resolution shape model. At each point of the reference, there is a vector V0 from the model center to that point and a normal N0 to the surface. That normal is extended some distance until it pierces one or more of the ensemble of maplets, and the average A of those distances is taken to represent the piercing point on the new model's surface. The new surface vector is V = V0 + A*N0. The picture below is a visual representation of the paragraph above. {{{ ___...-------...___ maplet | | | |A*N0 ______|___________|_________ reference \ / \ / V0 \ / }}} The new surface vector V will differ from V0 more noticeably when tiling at lower resolution because there are mismatches in maplet locations simply due to the formal uncertainties of the estimation process. Therefore, we have found it better to average the maplet normals N at each point, keeping a small randomly selected set of the A as conditioning heights. == Required Files == * [[LMRKLIST.TXT]] - List of all landmarks to be used * [[LMKFILES]]/ - Directory of .LMK files for each maplet * [[MAPFILES]]/ - Directory of .MAP files * [[SHAPEFILES]]/ - Directory of built shapes == Optional Files == * [[LMRKLISTR.TXT]] - Specific list of landmarks desired == Output Files == * [[SIGMA.TXT]] - list of sigma values associated with the shape model (found in [[SHAPEFILES]]/) * Shape file in ICQ format ---------- == Using densify == Although '''densify''' can be run interactively, the input commands are usually prearranged in a file (e.g., "tmpRun.txt") and you invoke the program from the command line like this: {{{ ~/bin/densify < tmpRun.txt }}} Here is an annotated sample "tmpRun.txt" file showing the input commands: {{{ SHAPEFILES/PreviousShapeFile (input shape) 2 100 1.67773 (K (power of 2), search range (km), random seed) SHAPEFILES/CurrentShapeFile (output shape) <--At this point the map-averaged shape at a higher resolution is made 1 (more iteration) <--At this point we begin the slopes to heights integration .005 (fraction of points used for conditioning) <--These are sample heights we select for the slope->heights integration .025 (conditioning weight) 1 (more iterations) <--More slope to heights integration 1 1 1 1 1 1 1 1 1 1 1 1 1 0 (end program) }}} The input commands are: * '''line 1''' - The input SHAPE file * '''line 2''' - A multiplicative scaling factor K (usually 2), a limit (in km) specifying how far along the surface normal the program should search for a maplet, a random seed in the form of a large integer /!\ This random seed is superseded if you enter one on the command line after you invoke densify. * '''line 3''' - The output SHAPE file * '''line 4''' - 1 = an iteration * '''line 5''' - The fraction of points used for conditioning (usually .005) * '''line 6''' - The conditioning weight * '''line 7''' ... - 1 = an iteration (as many as you need) * '''last line''' - 0 = end program In most cases, the maplets will cover most of the surface. Where it is not covered, the normals to the input model provide the "slopes" and the integration proceeds without any randomly chosen conditioning heights from these areas. In some cases, such as fast flybys of small bodies, only a small fraction of the surface is visible and vast areas are unknown. In these cases, conditioning heights are also taken from the input model as well. Specify this option by using a negative value for K (usually -2). (!) In this case, use a negative value for K (-2) because, for every location in the shape model for which we don't have map coverage, '''densify''' will print on the screen. Setting the value to -2 will block printing to the standard output. '''densify''' then determines the average height along each surface normal from each reference point of the densified shape. It also determines the average maplet surface normal and the standard deviation of the heights, used as a measure of uncertainty. It produces the output SHAPE file and a similar file called [[SIGMA.TXT]] that has an extra column representing the uncertainty. [[SIGMA.TXT]] can be displayed as an image to show areas that might need further work. After it completes the commands in the file, '''densify''' gives these options: {{{ 0. end program 1. proceed to iteration }}} If you enter '0', the output shape model will be the height averaged result. (!) This shows the first step in increasing the resolution of the shape model by a factor of 2. At this stage, you are only averaging the map heights to construct a higher resolution shape. If you enter ‘0’, then you skip the slope to heights integration. However, you don't want to do that. That part is already described in the example script above. The entire script, with the output model called [[SHAPEX.TXT]] and '0' entered to the perform no iterations, looks like this: {{{ densify SHAPEFILES/SHAPE1.TXT < input shape 2, 1.0, 5639 < K, search range (km), random SEED SHAPEFILES/SHAPEX.TXT < output shape 0 < end program }}} If you enter '1', the program prompts: {{{ input fraction }}} Enter the fraction of averaged heights (and empty heights if K<0) used to condition the integration (usually '.005'). The program prompts: {{{ input weight }}} Input the weight given to the conditioning heights (usually '.025'). The program produces an output SHAPE file and gives these options: {{{ 0. end program 1. more iteration 2. change weight }}} The interim shape can be viewed to see whether you want to change the weight given to the conditioning heights using the procedure described below. Usually, you just continue iterating or, finally, exit the program. By tradition, usually use: * SHAPE0 for Q=64 * SHAPE1 for Q=128 * SHAPE2 for Q=256 * SHAPE3 for Q=512 If there have been no problems after you complete this run, at the command line enter: {{{ cp SHAPEFILES/SHAPEX.TXT SHAPEFILES/SHAPE2.TXT }}} After another densification, when SHAPEX.TXT is Q=512, at the command line enter: {{{ cp SHAPEFILES/SHAPEX.TXT SHAPEFILES/SHAPE3.TXT }}} SHAPE.TXT is also Q=512 and you need to update that as well. /!\ For historical reasons, some scripts change permissions on SHAPE.TXT to read only. At the command line enter: {{{ chmod +w SHAPE.TXT cp SHAPEFILES/SHAPEX.TXT SHAPEFILES/SHAPE.TXT }}} === Interactive === If you want to run '''densify''' interactively, the initial inputs are: * the input SHAPE file * the output SHAPE file * scaling factor K (usually 2), limit (in km) , random seed (large integer) /!\ This random seed is superseded if you enter one on the command line after you invoke densify. '''densify''' will then prompt you for the remaining inputs and iterations. ----------- ''(Compiled by TC)'' CategoryPrograms