Block 1 - Setup v2
Description
These are what is needed to set up a SPC directory with the assumption that it will be used for OSIRIS-REX
Assumptions
- Bourne-Again Shell (bash)
- Group OREX\spc
Directories
- Root directory - This is not the actual root directory of a Unix file system, but the top directory of the SPC modeling. It will contain the other directories needed to support.
- Working directory - This is where SPC is done (the actual commands)
- Traditionally - The working directory is the name of the object.
- ORex - We will be using the specific shape model version name for the working directory. The expected naming scheme:
Data directory || OSIRIS_REX||
- DATA - Where the kernels go
- NEW_IMAGES_YYYY_DDD - Where the images goes
Murphy -- we have directories for volatile backup of landmark files and sumfiles
/root/F3G-Nav/
ORex/
DATA/
base/
IMAGEFILES/
SHAPEFILES/
lsupport/
orig/
results/
test/
User inputs
testID - Name of the F3 test directory (for example, 'F3E-Limbs')
blockID - User-specified identifier for typescript textfile name (for example, 'Block-01-01-TestDirSetUp-Orig')
Procedure
1. Initial inputs
# User inputs: testID=F3G-Nav blockID=Block-01-01-TestDirSetUp-Orig
2. Set-up
# Set-Up cd /SPC_Test/$testID script date pwd ls -l
3. Synchronize to base directory
# sync to F3-base directory rsync --delete -ha ../F3-base/orig . rsync -ha ../F3-base/base/IMAGEFILES base/
Not sure if this will be a step in general version. Need to fix numbering.
## VARIANCE-F3G: rm orig/DATA ln -s ../ORex/DATA orig/DATA ## END OF VARIANCE
4. Print details
# Print details ls -l orig cat orig/README ls -l base/IMAGEFILES cat base/IMAGEFILES/README
5. Complete procedure
# Block Complete
exit
# Save block log
if [ ! -d /SPC_Test/$testID/log ]; then
mkdir /SPC_Test/$testID/log
fi
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}
(Compiled by DL)