Block 4 - Autoregister V0
copied from working--needs to be made generic
Description
This block batch autoregisters images contained in lsupport/PICTLIST.TXT.
Assumptions
- You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
- You are a member of the group OREX\spc
- You have set up a skeleton directory in the following format:
/SPC_Test/F3G-Nav/ ORex/ DATA/ base/ IMAGEFILES/ SHAPEFILES/ lsupport/ orig/ results/ test/
- You have completed the processing steps in Block 1 - Setup Directory
- You have populated the orig/ directory with test-specific images following the steps in:
- Block 2 - Ingest
- ??????
- You have populated lsupport/PICTLIST-forRegistering.TXT with the correct subset of images to register
- You have registered images listed in lsupport/PICTLIST.TXT-forRegistering.TXT following these steps in How to Register Images - Batch
User inputs
testID - Name of the F3 test directory (for example, 'F3E-Limbs')
dirID - Name of sub-directory in which to work (e.g. 'orig', or 'test')
blockID - User-specified identifier for typescript textfile name (for example, 'Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages')
Procedure
1. Initial inputs
# User inputs: testID=F3G-Nav dirID=orig blockID=Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages
2. Set-up
# Set-Up cd /SPC_Test/$testID/$dirID/ script date pwd ls -l
3. Set-up batch autoregister files
# set-up batch autoregister files cp lsupport/PICTLIST-forRegistering.TXT make_script.in cat make_script.in cp scripts/make_scriptA.seed . cat make_scriptA.seed make_scriptA ls -l
4. Batch autoregister images
# Batch autoregister images ls -l /usr/local/bin/autoregister nohup sh run_script.b &
5. Monitor progress
# Monitor progress ls -l *.INN *.OOT
6. Check results
how to handle variance within?
# Check results # Since early iterations are not masked - logEval picks up NO CORRS which are later eliminated sh support/logEvalP.sh cat logResults.txt cat lowImg.txt cat redo.txt convert TESTFILES/*.pgm TESTFILES/*.jpg open TESTFILES/*.jpg ## VARIANCE-dlambert@ORMACSRV1.lpl.arizona.edu: cp TESTFILES/*.jpg ~/send # images inspected on home-machine ## END OF VARIANCE
7. Fix uncorrelated images
# Fix uncorrelated images .......
8. Clean directory
# Clean directory sh rem_script.b rm TESTFILES/* rm nohup.out
9. Complete procedure
# Block Complete exit # Save block log if [ ! -d /SPC_Test/$testID/log ]; then mkdir /SPC_Test/$testID/log fi mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}
(Compiled by DL)