Differences between revisions 1 and 3 (spanning 2 versions)

Block 4 - Autoregister V0

copied from working--needs to be made generic

Description

This block batch autoregisters images contained in lsupport/PICTLIST.TXT.

Assumptions

You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
You are a member of the group OREX\spc
You have set up a skeleton directory in the following format:

 /SPC_Test/F3G-Nav/
                   ORex/
                            DATA/
                   base/
                            IMAGEFILES/
                            SHAPEFILES/
                   lsupport/
                   orig/
                   results/
                   test/

You have completed the processing steps in Block 1 - Setup Directory
You have populated the orig/ directory with test-specific images following the steps in:
- Block 2 - Ingest
- ??????
You have populated lsupport/PICTLIST-forRegistering.TXT with the correct subset of images to register
You have registered images listed in lsupport/PICTLIST.TXT-forRegistering.TXT following these steps in How to Register Images - Batch

User inputs

testID - Name of the F3 test directory (for example, 'F3E-Limbs')
dirID - Name of sub-directory in which to work (e.g. 'orig', or 'test')
blockID - User-specified identifier for typescript textfile name (for example, 'Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages')

Procedure

1. Initial inputs

# User inputs:
testID=F3G-Nav
dirID=orig
blockID=Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages

2. Set-up

# Set-Up
cd /SPC_Test/$testID/$dirID/
script
date
pwd
ls -l

3. Set-up batch autoregister files

# set-up batch autoregister files
cp lsupport/PICTLIST-forRegistering.TXT make_script.in
cat make_script.in
cp scripts/make_scriptA.seed .
cat make_scriptA.seed
make_scriptA
ls -l

4. Batch autoregister images

# Batch autoregister images
ls -l /usr/local/bin/autoregister
nohup sh run_script.b &

5. Monitor progress

# Monitor progress
ls -l *.INN *.OOT

6. Check results

how to handle variance within?

# Check results
# Since early iterations are not masked - logEval picks up NO CORRS which are later eliminated
sh support/logEvalP.sh
cat logResults.txt 
cat lowImg.txt
cat redo.txt
convert TESTFILES/*.pgm TESTFILES/*.jpg
open TESTFILES/*.jpg
## [email protected]:
cp TESTFILES/*.jpg ~/send
# images inspected on home-machine
## END OF VARIANCE

7. Fix uncorrelated images

# Fix uncorrelated images
.......

8. Clean directory

# Clean directory
sh rem_script.b
rm TESTFILES/*
rm nohup.out

9. Complete procedure

# Block Complete
exit
# Save block log
if [ ! -d /SPC_Test/$testID/log ]; then
  mkdir /SPC_Test/$testID/log
fi
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}

(Compiled by DL)

CategoryHowTos

-  ⇤ ← Revision 1 as of 2016-02-18 13:02:15 → 
  Size: 76
  Editor: BMittan
  Comment:
+   ← Revision 3 as of 2016-02-23 23:55:39 → ⇥
  Size: 3206
  Editor: EricPalmer
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
+## page was renamed from Block 4 - Autoregister V0
-Line 3:
+Line 4:
- (./) insert basic setup for how to page.
+ (./) copied from working--needs to be made generic

== Description ==

This block batch autoregisters images contained in lsupport/PICTLIST.TXT.

== Assumptions ==
 * You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
 * You are a member of the group OREX\spc
 * You have set up a skeleton directory in the following format:
{{{
 /SPC_Test/F3G-Nav/
                   ORex/
                            DATA/
                   base/
                            IMAGEFILES/
                            SHAPEFILES/
                   lsupport/
                   orig/
                   results/
                   test/
}}}

 * You have completed the processing steps in Block 1 - Setup Directory
 * You have populated the orig/ directory with test-specific images following the steps in:
  * Block 2 - Ingest
  * ??????
 * You have populated lsupport/PICTLIST-forRegistering.TXT with the correct subset of images to register 
 * You have registered images listed in lsupport/PICTLIST.TXT-forRegistering.TXT following these steps in How to Register Images - Batch


== User inputs ==
 * '''testID''' - Name of the F3 test directory (for example, 'F3E-Limbs')
 * '''dirID''' - Name of sub-directory in which to work (e.g. 'orig', or 'test')
 * '''blockID''' - User-specified identifier for typescript textfile name (for example, 'Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages')

== Procedure ==

=== 1. Initial inputs ===
{{{
# User inputs:
testID=F3G-Nav
dirID=orig
blockID=Block-03-02-Autoregister-Images-01stInvocation-F3G-GenericImages
}}}

=== 2. Set-up ===
{{{
# Set-Up
cd /SPC_Test/$testID/$dirID/
script
date
pwd
ls -l
}}}

=== 3. Set-up batch autoregister files ===
{{{
# set-up batch autoregister files
cp lsupport/PICTLIST-forRegistering.TXT make_script.in
cat make_script.in
cp scripts/make_scriptA.seed .
cat make_scriptA.seed
make_scriptA
ls -l
}}}

=== 4. Batch autoregister images ===

{{{
# Batch autoregister images
ls -l /usr/local/bin/autoregister
nohup sh run_script.b &
}}}

=== 5. Monitor progress ===
{{{
# Monitor progress
ls -l *.INN *.OOT
}}}

=== 6. Check results ===
 (./) how to handle variance within?
{{{
# Check results
# Since early iterations are not masked - logEval picks up NO CORRS which are later eliminated
sh support/logEvalP.sh
cat logResults.txt 
cat lowImg.txt
cat redo.txt
convert TESTFILES/*.pgm TESTFILES/*.jpg
open TESTFILES/*.jpg
## [email protected]:
cp TESTFILES/*.jpg ~/send
# images inspected on home-machine
## END OF VARIANCE
}}}

=== 7. Fix uncorrelated images ===
{{{
# Fix uncorrelated images
.......
}}}

=== 8. Clean directory ===
{{{
# Clean directory
sh rem_script.b
rm TESTFILES/*
rm nohup.out
}}}

=== 9. Complete procedure ===
{{{
# Block Complete
exit
# Save block log
if [ ! -d /SPC_Test/$testID/log ]; then
  mkdir /SPC_Test/$testID/log
fi
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}
}}}

----------

''(Compiled by DL)''

CategoryHowTos