Differences between revisions 61 and 65 (spanning 4 versions)
⇤ ← Revision 61 as of 2019-11-20 15:13:23 →
Size: 4520
Editor: JohnWeirich
Comment:
← Revision 65 as of 2020-02-07 10:38:11 → ⇥
Size: 3801
Editor: EricPalmer
Comment:
Deletions are marked like this. Additions are marked like this.
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ls
}}}


{{{
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# CAREFUL! If tiling created bad landmarks, the below will "burn in" that topography in the bigmap.
# I recommend fixing errors before running the below.
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#bigmap < nftConfig/nftBigmap-$ID-$Res.in
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cp LMRKLIST1.TXT nftConfig/list-$ID-$Res.txt
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--- --------
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== If 5 cm maplets, change them to 6 cm maplets ==
Many of the maplets will throw a "!" because they will have insufficient overlap; these can be ignored. The "*" will most likely because the maplet is only partially filled; these should be touched up by hand and iterated upon.		 == ROI Iterate over new maplets (Note: Uses LMRKLIST1.TXT) ==
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echo "Getting ready for iteration $ID-$Res" >> notes
date >> notes
echo $ID$Res | tee -a notes
echo ${ID}A > tmpRun
cat nftConfig/nftBigmap-$ID-$Res.IN>> tmpRun
cat tmpRun >> notes
bigMapRef < tmpRun
tail -2 SIGMAS.TXT | head -1 | tee -a notes
echo y | cp -v LMRKLIST1.TXT LIST.TXT
duplicates
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bigmap < nftConfig/nftBigmap-$ID-6.IN
cd MAPFILES
relink.sh ${ID}6.MAP XXXXXX.MAP
cd ..		 relink.sh scripts/Piterate1St.seed make_scriptP.seed | tee -a notes
ls -l make_scriptP.seed >> notes
MAKE_LMRKLISTX
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grep -Ff USED_MAPS.TXT MAPINFO.TXT | grep "0.0500 m" | cut -c1-6 > make_script.in
echo "END" >> make_script.in
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relink.sh support/FfiveToSix.seed make_scriptF.seed
make_scriptF
nohup sh run_script.b
finished resetting-5-to-6		 make_scriptP | tee run.sh
echo "Running iteration at " `date` >> notes
sh run.sh
monitor
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#When finished
find_nofit | tee -a notes
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echo 4 | nftBlockFinish.sh nft.$ID
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== Generate X map if resolution allows == {{{
checkVar $ID $Res $logP
bigMapRef < tmpRun
echo "Post run Sigma" >> notes
tail -2 SIGMAS.TXT | head -1 | tee -a notes
}}}
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#Make bigmap over landmark
bigmap < nftConfig/nftBigmap-$ID-A.IN
cd MAPFILES
relink.sh ${ID}A.MAP XXXXXX.MAP
cd ..

# Generate in file for LITHOS based on existing bigmap and seed files
echo "c" > XTMP.INN
echo "${ID}X" >> XTMP.INN
head -3 nftConfig/nftBigmap-$ID-A.IN >> XTMP.INN
head -4 nftConfig/nftBigmap-$ID-A.IN | tail -1 | cut -c1-20 >> XTMP.INN
echo "i" >> XTMP.INN
echo "${ID}X" >> XTMP.INN
Sleng=`wc nftConfig/nftSeed-$ID-6.seed | cut -c1-12 | bc`
Tleng=`echo "$Sleng-4" | bc`
tail -$Tleng nftConfig/nftSeed-$ID-6.seed >> XTMP.INN

#Create X map
LITHOS < XTMP.INN > XTMP.OOT

#Check OOT to make sure there are no *'s
rm XTMP.*
 checkVar $ID $Res $logP
echo 2 | nftBlockFinish.sh nft.$ID
sh rem_script.b

Resolutions files

If we need to "drill down" to a high resolution, then we need to do it at several steps. We will use the following steps:

  • Resolution

    Code

    5cm

    5

    2cm

    2

    1cm

    1

    finalGSD/2

    0

For each *.IN file you have, the entire tile, iterate, clean process should be done. I.E. Do all the steps for 5cm, then for 2cm, then for 1cm and then for your final NFT feature

Setup for tiling

ID=00000
Res=5

logP=log/$ID$Res
mkdir -p $logP


echo nft=$ID > config/nftID
echo res=$Res >> config/nftID


checkVar $ID $Res $logP
bigmap < nftConfig/nftBigmap-$ID-A.IN

#echo y | cp USED_MAPS.TXT log/$ID$Res/nftMapList-$ID$Res
#relink.sh lsupport/nftMapList-${ID}W make_script.in

Tiling

For width of 100 pixels, we are planning on a Q of 150 and a 5x5 maplet grid. 

checkVar $ID $Res $logP


rm -f LMRKLIST1.TXT

#JRW Comment: Should we use bigMapRef here? We do below for the high res artifact, so things shift around between the high and low artifacts.
bigmap < nftConfig/nftBigmap-$ID-$Res.IN
cd MAPFILES
relink.sh $ID$Res.MAP XXXXXX.MAP
cd ..

echo XXXXXX | showmap
convert XXXXXX.pgm $logP/low-$ID.jpg

echo XXXXXX > tmp
echo 0 0.0000${Res}999 >> tmp
map_coverage < tmp
convert coverage_m.pgm $logP/pre-$ID.jpg
convert coverage_m.pgm 1.jpg

Check to make sure the coordinates are correct 

echo $ID$Res > MAPLIST.TXT
echo END >> MAPLIST.TXT

img=`head -2 nftConfig/nftBigmap-$ID-A.IN | tail -1`
echo $img > tmp
echo n >> tmp
Imager_MG < tmp
convert TEMPFILE.pgm ~/send/$ID$Res.jpg

echo $img > tmp
echo y >> tmp
echo 0 >> tmp
echo n >> tmp
echo n >> tmp
Display < tmp
convert TEMPFILE.pgm ~/send/$img.jpg

Build the tile file and run 

checkVar $ID $Res $logP
echo N | make_tilefile > tmpOut
echo XXXXXX > lsupport/bigmap_tile.in
echo nftConfig/nftSeed-${ID}-${Res}.seed >> lsupport/bigmap_tile.IN
sed 1d tmpOut >> lsupport/bigmap_tile.in
relink.sh lsupport/bigmap_tile.in make_scriptT.in

echo "Begin Tiling" >> notes
echo "ID=$ID" >> notes
echo "Res=$Res" >> notes

make_scriptT
ls

nohup sh run_script.b
finished tiling-done

Check 

checkVar $ID $Res $logP

tileEval.sh

echo XXXXXX > tmp
echo 0 0.0000${Res}999 >> tmp
map_coverage < tmp
convert coverage_m.pgm $logP/post-$ID.jpg

echo ${ID}A > tmpRun
cat nftConfig/nftBigmap-$ID-$Res.IN>> tmpRun
bigMapRef < tmpRun

echo XXXXXX | showmap
convert XXXXXX.pgm $logP/high-$ID.jpg
score=`tail -2 SIGMAS.TXT | head -1 | cut -c 23-30`
mScore=`echo "scale=2; $score * 1000" | bc | cut -c -4`
convert SIGMAS.pgm   -fill white -gravity North -pointsize 15 -annotate +0+10 Max:${mScore}m   $logP/sig-$ID.jpg

cp LMRKLIST1.TXT nftConfig/list-$ID-$Res.txt

nftBlockFinish.sh nft.$ID

ROI Iterate over new maplets (Note: Uses LMRKLIST1.TXT)

checkVar $ID $Res $logP
echo "Getting ready for iteration $ID-$Res" >> notes
date >> notes
echo $ID$Res | tee -a notes
echo ${ID}A > tmpRun
cat nftConfig/nftBigmap-$ID-$Res.IN>> tmpRun
cat tmpRun >> notes
bigMapRef < tmpRun
tail -2 SIGMAS.TXT | head -1 | tee -a notes
echo y | cp -v LMRKLIST1.TXT LIST.TXT
duplicates

relink.sh scripts/Piterate1St.seed make_scriptP.seed | tee -a notes
ls -l make_scriptP.seed >> notes
MAKE_LMRKLISTX 


make_scriptP | tee run.sh
echo "Running iteration at " `date` >> notes
sh run.sh
monitor

checkVar $ID $Res $logP
bigMapRef < tmpRun
echo "Post run Sigma" >> notes
tail -2 SIGMAS.TXT | head -1 | tee -a notes

checkVar $ID $Res $logP
echo 2 | nftBlockFinish.sh nft.$ID
sh rem_script.b

NFT-2-tile (last edited 2020-02-10 16:02:55 by JohnWeirich)