• Test F3F Procedures Block-3A - REGISTER IMAGES - BATCH

Test F3F Procedures Block-3A - REGISTER IMAGES - BATCH

##########################################################################
##                                                                      ##
##                               BLOCK 3A                               ##
##                       REGISTER IMAGES - BATCH                        ##
##                                                                      ##
##########################################################################

## This block batch registers images contained in lsupport/listImagesForRegistering

## Assumptions:
## User has invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
## User is a member of the group OREX\spc
## User has set up a skeleton directory in the following format:
## /SPC_Test/F3G-Nav/
##                   base/
##                            IMAGEFILES/
##                            SHAPEFILES/
##                   lsupport/
##                            PICTLIST.TXT
##                   orig/
##                   results/
##                   test/
## User has completed the processing steps comprising Block 1A - TEST DIRECTORY
## SET-UP - ORIG
## User has additionally populated the orig/ dircteory with test-specific images as per 
## Block 2A / 2B
## User has populated lsupport/listImagesForRegistering with the correct subset of 
## images to register 

## User inputs:
## testID: Name of the F3 test directory (for example, F3E-Limbs)
## dirID: Name of sub-directory in which to work (e.g. orig, or test)
## blockID: User-specified identifier for typescript textfile name 
##          (for example, Block-3A-Register-Images-F3G-GenericImages)

# User inputs:
export testID=F3F-Photo
export dirID=orig
export blockID=Block-3A-Register-Images-F3F-DSImages

# Set-Up
cd /SPC_Test/$testID/$dirID/
script

# Display user inputs
echo $testID
echo $dirID
echo $blockID

date
pwd
ls -l

## VARIANCE: F3F - pre-registered images, replace original sumfiles
cp ../base/registeredSUMFILES_G2MapCam/M60* SUMFILES/
ls -l SUMFILES/M60*
cp ../base/registeredSUMFILES_H2PolyCam/P60* SUMFILES/
cp ../base/registeredSUMFILES_H3PolyCam/P60* SUMFILES/
ls -l SUMFILES/P60*
## END OF VARIANCE

# set-up batch register files
cp lsupport/listImagesForRegistering make_script.in
cat make_script.in
cp scripts/make_scriptR.SEED make_scriptR.seed
cat make_scriptR.seed
make_scriptR
ls -l

# Batch register images
register -v
nohup sh run_script.b &

# Monitor progress
ls -l *.INN *.OOT

# Check results
ls -l *.OOT | grep -v 7478
sh support/registerEval.sh
cat evalOut.txt
cat evalBad.txt 
cat evalGood.txt

# Inspect display outputs
## DECISION:

## OPTION 1: Inspect display outputs on cloud
ls -l TESTFILES | cut -d '.' -f 1 | rev | cut -d \  -f 1 | rev > listTEST
while read line; do
echo "Displaying TESTFILES/$line"
/opt/local/bin/display TESTFILES/$line
done < listTEST 
rm listTEST
## END OF OPTION 1

##OPTION 2: Inspect display output on a different machine
rm ~/send/*
ls -l TESTFILES | cut -d '.' -f 1 | rev | cut -d \  -f 1 | rev > listTEST
while read line; do
echo $line
/opt/local/bin/convert TESTFILES/${line}.pgm ~/send/${line}.jpg
done < listTEST
rm listTEST
# images inspected on different machine
## END OF OPTION 2

# Fix unregistered images
# Manually register images and inspect output displays as required

# Save register log files
mkdir -p /SPC_Test/$testID/$dirID/log/log-${blockID}
mv make_script.in make_scriptR.seed /SPC_Test/$testID/$dirID/log/log-${blockID}/
mv *.INN *.OOT run* /SPC_Test/$testID/$dirID/log/log-${blockID}/
mv eval* /SPC_Test/$testID/$dirID/log/log-${blockID}/

# Clean directory
sh rem_script.b
rm TESTFILES/*
rm nohup.out

## VARIANCE: F3F DRY RUN - save registered sumfiles
rsync -ha SUMFILES/M60* ../base/registeredSUMFILES_G2MapCam/
rsync -ha SUMFILES/P60*H2.SUM ../base/registeredSUMFILES_H2PolyCam/
rsync -ha SUMFILES/P60*H3.SUM ../base/registeredSUMFILES_H3PolyCam/
## END OF VARIANCE

# Block Complete
date
exit

# Save block log
if [ ! -d /SPC_Test/$testID/log ]; then
  mkdir /SPC_Test/$testID/log
fi

# OPTION 1: OVERWRITE TYPESCRIPT LOG
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}
# END OF OPTION 1

# OPTION 2: APPEND TYPESCRIPT LOG
cat typescript >> /SPC_Test/$testID/log/log-typescript-${blockID}
# END OF OPTION 2