Differences between revisions 1 and 40 (spanning 39 versions)

find_nofit

(Compiled by DL)

Requires

make_script.in - input file for batch processes such as make_scriptF, make_scriptR, make_scriptA or make_scriptAP.

Either:

LMRK.OOT files - output by a batch process such as make_scriptF.

Or:

PICT.OOT files - output by a batch process such as make_scriptR, make_scriptA or make_scriptAP.

Output

Either:

redo.txt - list of landmarks which terminated in error, do not correlate with at least one image, or correlate weakly with at least one image.

Or:

REMOVED.TXT - list of landmarks which have been eliminated from at least one image due to low or no correlation.

Description

The batch processes initiated by make_scriptF, make_scriptR, make_scriptA and make_scriptAP produce output files LMKNM.OOT or PICNM.OOT, basically listings of the outputs of procedures lithos, register, autoregister and autoregisterP respectively for each input landmark or image. find_nofit looks through these output files for each landmark or picture listed in the make_script.in file to find places where the landmarks or images may need further work.

If the entries in the .in file are landmarks (make_script.infor lithos runs), the find_nofit procedure identifies:

! cat LMKNM.OOT: process still running or terminated in error.
* cat LMKNM.OOT: maplets not correlating with at least one image.
+ cat LMKNM.OOT: maplets correlating weakly with at least one image.
. cat LMKNM.OOT: no correlation for at least one overlap.
cat LMKNM.OOT: low correlation for at least one overlap.

The cat LMKNM.OOT will produce a listing of the output file for more complete diagnostics. The program also produces a redo.txt file listing those landmarks that failed one of the first three tests. The limit for weak correlation is set by the 'NOFIT=' keyword in INIT_LITHOS.TXT.

If the entries in the .in file are images (make_script.in for register, autoregister and autoregisterP runs), the find_nofit procedure identifies:

. cat PICNM.OOT image not correlating with at least one maplet.

The cat PICNM.OOT will produce a listing of the output file for more complete diagnostics. The program also produces a REMOVED.TXT file listing those landmarks that were eliminated from one of the images for low or no correlation.

Example output from find_nofit:

*  cat EE0017.OOT
   cat EE0019.OOT
   cat EE0022.OOT
.  cat EE0027.OOT
+  cat EE0034.OOT
*  cat EE0042.OOT
*  cat EE0044.OOT
+  cat EE0045.OOT
!  cat EE0051.OOT
!  cat EE0053.OOT
+  cat EE0054.OOT
   cat EE0055.OOT
!  cat EE0063.OOT
   cat EE0067.OOT
   cat EE0069.OOT
   cat EE0081.OOT

Example redo.txt file:

* EE0017
+ EE0034
* EE0042
* EE0044
+ EE0045
EE0051
EE0053
+ EE0054
EE0063
END

Example REMOVED.TXT file:

AA0001
AF0023

-  ⇤ ← Revision 1 as of 2011-11-29 16:37:57 → 
  Size: 547
  Editor: EricPalmer
  Comment:
+   ← Revision 40 as of 2016-01-26 10:57:41 → ⇥
  Size: 3065
  Editor: DianeLambert
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-Describe find nofit.e here.
+## page was renamed from find_nofitT.e
## page was renamed from find nofit.e
= find_nofit =
(Compiled by DL)
-Line 3:
+Line 6:
+== Requires ==
 * [[make_script.in]] - input file for batch processes such as [[make_scriptF]], [[make_scriptR]], [[make_scriptA]] or [[make_scriptAP]].
Either:
 * LMRK.OOT files -  output by a batch process such as [[make_scriptF]].
Or:
 * PICT.OOT files - output by a batch process such as [[make_scriptR]], [[make_scriptA]] or [[make_scriptAP]].
-Line 4:
+Line 13:
-= nofit =
+== Output ==
Either:
 * [[redo.txt]] - list of landmarks which terminated in error, do not correlate with at least one image, or correlate weakly with at least one image.
Or:
 * [[REMOVED.TXT]] - list of landmarks which have been eliminated from at least one image due to low or no correlation.
-Line 6:
+Line 19:
-=== Input ===
 * stdin:  none
 * Works in local directory.
 * CORRECT? - Reads all of the ????.OOT files in the local directory
+== Description ==
-Line 11:
+Line 21:
-=== Output ===
 * !
 * LMKNM
 * *LMKNM
 * Examples:
+The batch processes initiated by [[make_scriptF]], [[make_scriptR]], [[make_scriptA]] and [[make_scriptAP]] produce output files LMKNM.OOT or PICNM.OOT, basically listings of the outputs of procedures [[lithos]], [[register]], [[autoregister]] and [[autoregisterP]] respectively for each input landmark or image.  find_nofit looks through these output files for each landmark or picture listed in the [[make_script.in]] file to find places where the landmarks or images may need further work.
-Line 17:
+Line 23:
-!  cat 023.OOT  process still running (okay) or process didn’t finish normally (bummer).
    LMKNM cat 023.OOT no correlation in at least one maplet overlap.  Probably no big deal.
*   LMKNM cat 023.OOT small or no correlation in at least one maplet-image overlap.  Should be checked by hand in LITHOS.
+If the entries in the .in file are landmarks ([[make_script.in]]for [[lithos]] runs), the find_nofit procedure identifies:
 * ! cat LMKNM.OOT:  process still running or terminated in error.
 * * cat LMKNM.OOT:  maplets not correlating with at least one image.
 * + cat LMKNM.OOT:  maplets correlating weakly with at least one image.
 * . cat LMKNM.OOT:  no correlation for at least one overlap.
 *   cat LMKNM.OOT:  low correlation for at least one overlap.
The cat LMKNM.OOT will produce a listing of the output file for more complete diagnostics.  The program also produces a [[redo.txt]] file listing those landmarks that failed one of the first three tests.  The limit for weak correlation is set by the 'NOFIT=' keyword in [[INIT_LITHOS.TXT]]. 

If the entries in the .in file are images ([[make_script.in]] for [[register]], [[autoregister]] and [[autoregisterP]] runs), the find_nofit procedure identifies:
 * . cat PICNM.OOT  image not correlating with at least one maplet.
The cat PICNM.OOT will produce a listing of the output file for more complete diagnostics.  The program also produces a [[REMOVED.TXT]] file listing those landmarks that were eliminated from one of the images for low or no correlation.

'''Example output from find_nofit:'''
{{{
*  cat EE0017.OOT
   cat EE0019.OOT
   cat EE0022.OOT
.  cat EE0027.OOT
+  cat EE0034.OOT
*  cat EE0042.OOT
*  cat EE0044.OOT
+  cat EE0045.OOT
!  cat EE0051.OOT
!  cat EE0053.OOT
+  cat EE0054.OOT
   cat EE0055.OOT
!  cat EE0063.OOT
   cat EE0067.OOT
   cat EE0069.OOT
   cat EE0081.OOT
}}}

Example [[redo.txt]] file:
{{{
* EE0017
+ EE0034
* EE0042
* EE0044
+ EE0045
EE0051
EE0053
+ EE0054
EE0063
END
}}}

Example [[REMOVED.TXT]] file:
{{{
AA0001
AF0023
}}}