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| Describe find nofit.e here. | ## page was renamed from find_nofitT.e ## page was renamed from find nofit.e = find_nofit = (Compiled by DL) |
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| '''Purpose:''' find_nofit searches batch processing output files to identify landmarks or images which may need further work. | |
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| = nofit = | == Requires == * [[make_script.in]] - input file for batch processes such as [[make_scriptF]], [[make_scriptR]], [[make_scriptA]] or [[make_scriptAP]]. Either: * LMRK.OOT files - output by a batch process such as [[make_scriptF]]. Or: * PICT.OOT files - output by a batch process such as [[make_scriptR]], [[make_scriptA]] or [[make_scriptAP]]. |
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| === Input === * stdin: none * Works in local directory. * CORRECT? - Reads all of the ????.OOT files in the local directory |
== Output == Either: * [[redo.txt]] - list of landmarks which terminated in error, do not correlate with at least one image, or correlate weakly with at least one image. Or: * [[REMOVED.TXT]] - list of landmarks which have been eliminated from at least one image due to low or no correlation. |
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| === Output === * ! * LMKNM * *LMKNM * Examples: |
== Description == |
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| ! cat 023.OOT process still running (okay) or process didn’t finish normally (bummer). LMKNM cat 023.OOT no correlation in at least one maplet overlap. Probably no big deal. * LMKNM cat 023.OOT small or no correlation in at least one maplet-image overlap. Should be checked by hand in LITHOS. |
The batch processes initiated by [[make_scriptF]], [[make_scriptR]], [[make_scriptA]] and [[make_scriptAP]] produce output files LMKNM.OOT or PICNM.OOT, basically listings of the outputs of procedures [[lithos]], [[register]], [[autoregister]] and [[autoregisterP]] respectively for each input landmark or image. find_nofit looks through these output files for each landmark or picture listed in the [[make_script.in]] file to identify landmarks or images which may need further work. If the entries in the .in file are landmarks ([[make_script.in]]for [[lithos]] runs), the find_nofit procedure identifies: {{{ ! cat LMKNM.OOT - process still running or terminated in error. * cat LMKNM.OOT - maplets not correlating with at least one image. + cat LMKNM.OOT - maplets correlating weakly with at least one image. . cat LMKNM.OOT - no correlation for at least one overlap. cat LMKNM.OOT - low correlation for at least one overlap. }}} The cat LMKNM.OOT will produce a listing of the output file for more complete diagnostics. The program also produces a [[redo.txt]] file listing those landmarks that failed one of the first three tests. The limit for weak correlation is set by the 'NOFIT=' keyword in [[INIT_LITHOS.TXT]]. If the entries in the .in file are images ([[make_script.in]] for [[register]], [[autoregister]] and [[autoregisterP]] runs), the find_nofit procedure identifies: {{{ . cat PICNM.OOT image not correlating with at least one maplet. }}} The cat PICNM.OOT will produce a listing of the output file for more complete diagnostics. The program also produces a [[REMOVED.TXT]] file listing those landmarks that were eliminated from one of the images for low or no correlation. '''Example output from find_nofit:''' {{{ * cat EE0017.OOT <- maplets not correlating with at least one image cat EE0019.OOT <- low correlation for at least one overlap cat EE0022.OOT . cat EE0027.OOT <- no correlation for at least one overlap + cat EE0034.OOT <- maplets correlating weakly with at least one image * cat EE0042.OOT * cat EE0044.OOT + cat EE0045.OOT ! cat EE0051.OOT <- process still running or terminated in error ! cat EE0053.OOT + cat EE0054.OOT cat EE0055.OOT ! cat EE0063.OOT cat EE0067.OOT cat EE0069.OOT cat EE0081.OOT }}} Example [[redo.txt]] file: {{{ * EE0017 <- maplets not correlating with at least one image + EE0034 <- maplets correlating weakly with at least one image * EE0042 * EE0044 + EE0045 EE0051 <- process still running or terminated in error EE0053 + EE0054 EE0063 END }}} Example [[REMOVED.TXT]] file: {{{ AA0001 <- maplet eliminated from an image for low or no correlation AF0023 }}} |
find_nofit
(Compiled by DL)
Purpose: find_nofit searches batch processing output files to identify landmarks or images which may need further work.
Requires
make_script.in - input file for batch processes such as make_scriptF, make_scriptR, make_scriptA or make_scriptAP.
Either:
LMRK.OOT files - output by a batch process such as make_scriptF.
Or:
PICT.OOT files - output by a batch process such as make_scriptR, make_scriptA or make_scriptAP.
Output
Either:
redo.txt - list of landmarks which terminated in error, do not correlate with at least one image, or correlate weakly with at least one image.
Or:
REMOVED.TXT - list of landmarks which have been eliminated from at least one image due to low or no correlation.
Description
The batch processes initiated by make_scriptF, make_scriptR, make_scriptA and make_scriptAP produce output files LMKNM.OOT or PICNM.OOT, basically listings of the outputs of procedures lithos, register, autoregister and autoregisterP respectively for each input landmark or image. find_nofit looks through these output files for each landmark or picture listed in the make_script.in file to identify landmarks or images which may need further work.
If the entries in the .in file are landmarks (make_script.infor lithos runs), the find_nofit procedure identifies:
! cat LMKNM.OOT - process still running or terminated in error. * cat LMKNM.OOT - maplets not correlating with at least one image. + cat LMKNM.OOT - maplets correlating weakly with at least one image. . cat LMKNM.OOT - no correlation for at least one overlap. cat LMKNM.OOT - low correlation for at least one overlap.
The cat LMKNM.OOT will produce a listing of the output file for more complete diagnostics. The program also produces a redo.txt file listing those landmarks that failed one of the first three tests. The limit for weak correlation is set by the 'NOFIT=' keyword in INIT_LITHOS.TXT.
If the entries in the .in file are images (make_script.in for register, autoregister and autoregisterP runs), the find_nofit procedure identifies:
. cat PICNM.OOT image not correlating with at least one maplet.
The cat PICNM.OOT will produce a listing of the output file for more complete diagnostics. The program also produces a REMOVED.TXT file listing those landmarks that were eliminated from one of the images for low or no correlation.
Example output from find_nofit:
* cat EE0017.OOT <- maplets not correlating with at least one image cat EE0019.OOT <- low correlation for at least one overlap cat EE0022.OOT . cat EE0027.OOT <- no correlation for at least one overlap + cat EE0034.OOT <- maplets correlating weakly with at least one image * cat EE0042.OOT * cat EE0044.OOT + cat EE0045.OOT ! cat EE0051.OOT <- process still running or terminated in error ! cat EE0053.OOT + cat EE0054.OOT cat EE0055.OOT ! cat EE0063.OOT cat EE0067.OOT cat EE0069.OOT cat EE0081.OOT
Example redo.txt file:
* EE0017 <- maplets not correlating with at least one image + EE0034 <- maplets correlating weakly with at least one image * EE0042 * EE0044 + EE0045 EE0051 <- process still running or terminated in error EE0053 + EE0054 EE0063 END
Example REMOVED.TXT file:
AA0001 <- maplet eliminated from an image for low or no correlation AF0023