make_scriptF

Description

This program generates the run script and .INN files required for batch processing using lithos. You must also generate a seed file containing the required lithos commands.

make_scriptF is a generic script maker for batch lithos processing tasks. You specify the set of landmarks to process in make_script.in and the sequence of commands to process in make_scriptF.seed.

make_scriptF generates the .INN files and run scripts to batch process the landmarks, and generates .OOT files and saves display files during processing for user inspection.

$/!\$ You should test the command sequence in lithos before running the script generated by make_scriptF.

Required Files

input file:

make_script.in - Text file containing the names of landmarks to be processed.

seed file:

make_scriptF.seed - Text file containing the lithos option commands intended during batch processing.

processed files:

TESTFILES/ - Directory in which to store copies of LMRK_DISPLAY1.pgm (output by lithos) for each landmark.
TESTFILES1/ - Directory in which to store copies of tmpl.pgm (output by lithos) for each landmark.
$/!\$ lithos requires a number of directories and files. Refer to lithos for more information.

Output Files

make_scriptF outputs:

run_script.b - Run script for batch processing.
.INN files - lithos command seed file for each landmark.
rem_script.b - Script for removal of temporary files (working directory clean-up).

run_script.b outputs:

.OOT files - standard output from lithos for each landmark.

processed files outputs: * TESTFILES/ - A copy of LMRK_DISPLAY1.pgm (output by lithos) is saved for each landmark.

TESTFILES1/ - A copy of tmpl.pgm (output by lithos) is saved for each landmark.
SUMFILES/ - S/C and camera information are updated by lithos if image shifts occur.
LMKFILES/ - LMKFILES for each landmark are updated by lithos.
MAPFILES/ - MAPFILES for each landmark are updated by lithos.
a number of information text and display files in the working directory are modified by lithos; please refer to the relevant guide for details.

Using make_scriptF

Create Input Files - make_script.in

Example make_script.in file (see make_script.in for further details):

EE0001
EE0002
EE0003
END

Create Input Files - make_scriptF.seed

lithos expects a sequence of start and end commands which must be contained in the seed file, as follows.

Start Commands

The .INN file will start with the command i: input landmark, and the landmark name, in the above example EE0001. lithos asks the user whether more images should be checked for - there follow two sequences of commands depending on the user input, as follows:

 Check for more images? y[n]
n
 Include a single image? y[n]
n

 Check for more images? y[n]
y

 Enter fractional width (0=center).
.5

 Reject invisibles? y[n]
n

The seed file must therefore start with a sequence that deals with this option set.

End Commands

make_scriptF expects the user to quit lithos on completion of each landmark, therefore the seed file must contain the quit command q on the second-to-last-line.

End-Of-File

make_scriptF expects the seed file to end with the end-of-file identifier, END. Any commands following this will not be appended to the .INN file.

Comments

make_scriptF does not append to the .INN file any line beginning with #, the user may therefore use this special character for comment lines.

Example make_scriptF.seed file:

# Seed file to attach map to overlapping maps
#start commands
n                                                 <- don't check for more images
n                                                 <- don't include a single image
#processing commands
o
RECENT
y
1
o
RECENT
n
3
y
1, 3, 5 w
i
RECENT
n
n
v
1
u
1
o
RECENT
n
1
#end command
q                                                 <- quit
#end-of-file identifier
END                                               <- end-of-file

Run make_scriptF

make_scriptF generates a .INN file for each landmark listed in make_script.in. The first two lines of the .INN file (see below) load the next landmark into lithos. The remainder of the .INN file comprises a copy of the lithos commands contained in make_scriptF.seed.

Example EE0001.INN file:

make_scriptF also generates the run script - run_script.b:

rm -f EE0001.OOT
/usr/local/bin/LITHOS < EE0001.INN > EE0001.OOT
cp LMRK_DISPLAY1.pgm ./TESTFILES/EE0001.pgm
cp tmpl.pgm ./TESTFILES1/EE0001.pgm
rm -f EE0002.OOT
/usr/local/bin/LITHOS < EE0002.INN > EE0002.OOT
cp LMRK_DISPLAY1.pgm ./TESTFILES/EE0002.pgm
cp tmpl.pgm ./TESTFILES1/EE0002.pgm
rm -f EE0003.OOT
/usr/local/bin/LITHOS < EE0003.INN > EE0003.OOT
cp LMRK_DISPLAY1.pgm ./TESTFILES/EE0003.pgm
cp tmpl.pgm ./TESTFILES1/EE0003.pgm

Execute Run Script

sh run_script.b

or in the background:

nohup sh run_script.b &

The lithos standard output for each image is captured in the .OOT files, and the LMRKDISPLAY1.pgm and tmpl.pgm files output by lithos are copied once a landmark has been processed, these are stored under the landmark's name in TESTFILES/ and TESTFILES1/ respectively.

Quality Check New Maplets

The user must review the .OOT files to ascertain the success of the tiling process.

Clean Working Directory

rem_script.b can be used to clean out the directory of make_scriptF working files once tiling is complete and user has quality checked the resulting suite of maplets:

rm -f *.INN
rm -f *.OOT
rm -f run_script*

User Warnings

The make_scriptF.seed file must start with a set of commands which deal with the lithos Check for more images? y[n] option sequence.
The make_scriptF.seed file must end with the lithos quit command, q, and the end-of-file identifier, END.
The user should test the make_scriptF.seed lithos command sequence before running the make_scriptF-generated run script.

(Compiled by DL) CategoryPrograms