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(Compiled by DL)
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'''Purpose:''' Generates the run script and .INN files required to batch register new images. == Description ==
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=== Requires === This program generates the run script and .INN files required to batch register new images.
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 * [[make_script.in]] - text file containing the names of the images to batch register.
 * [[make_scriptR.seed]] - text file containing the register option commands for batch registering images.
 * TESTFILES/ - Directory in which to store copies of LMRK_DISPLAY.pgm (output by [[register]]) for each image.		 === Required Files ===
'''input file''':
 * [[make_script.in]] - Text file containing the names of the images to batch register.
'''seed file''':
 * [[make_scriptR.seed]] - Text file containing the register option commands for batch registering images.
'''processed files''':
 * [[TESTFILES]]/ - Directory in which to store copies of LMRK_DISPLAY.pgm (output by [[register]]) for each image.
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NB: [[register]] requires a number of directories and files - refer to relevant guide.  /!\ '''register''' requires a number of directories and files. Refer to [[regiser]] for more information.
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=== Output === === Output Files ===
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make_scriptR outputs:
 * run_script.b - run script for batch image registration.
 * .INN files - register seed file for each image.
run_script.b output:
 * .OOT files - standard output from register for each image.
 * TESTFILES/ - a copy of LMRK_DISPLAY.pgm (output by [[register]]) is saved for each image;
 * [[NOMINALS]]/ - if the seed file includes the option to update the NOMINAL file, starting S/C and camera information will be updated (an option not typically selected);		 '''make_scriptR outputs''':
 * run_script.b - Run script for batch image registration.
 * .INN files - [[register]] seed file for each image.
'''run_script.b output''':
 * .OOT files - Standard output from [[register]] for each image.
'''processed files outputs''':
 * [[TESTFILES]]/ - A copy of LMRK_DISPLAY.pgm (output by [[register]]) is saved for each image.
 * [[NOMINALS]]/ - If the seed file includes the option to update the NOMINAL file, starting S/C and camera information will be updated. (This option is not typically selected).
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=== Create Input Files ===  1. Create Input Files
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Example '''make_script.in''' file: Here is a sample [[make_script.in]] file (see that entry for further information):
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NB: A space must precede each image filename.  /!\ You must precede each image filename with a space.
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Example '''make_scriptR.seed''' file (see [[make_scriptR.seed]] for further details): Here is a sample [[make_scriptR.seed]] file (see that entry for further information):
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== Run make_scriptR ==  1.#2 Run make_scriptR
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make_scriptR generates a .INN file for each image (the image filename appended with the register options contained in the make_scriptR.seed file. Example '''P3T11S2H0409.INN''' file: '''make_scriptR''' generates a .INN file for each image. It consists of the image filename followed by the register options contained in the [[make_scriptR.seed]] file.

Here is a sample .INN file for image '''P3T11S2H0409.INN''':
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make_scriptR also generates the run script - '''run_script.b''': '''make_scriptR''' also generates the '''run_script.b''' script, which looks like this:
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== Batch Register Images ==  1.#3 Batch Register Images

Here is a sample command line for running '''run_script.b''':
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The register standard output for each image is captured in the .OOT files, and the LMRKDISPLAY.pgm file output by [[register]] is copied and stored in TESTFILES/ once an image has been processed. The user must review the .OOT files to ascertain the success of the batch image registration process. (A ''find-nofit'' program does not currently exist for batch image registration.) The [[register]] standard output for each image is captured in the .OOT files. The LMRKDISPLAY.pgm file output by [[register]] is copied and stored in [[TESTFILES]]/ once an image has been processed. You must review the .OOT files to ascertain the success of the batch image registration process.

 (!) There is currently no '''find-nofit''' program for batch image registration.

----------

(Compiled by DL)

CategoryPrograms

make_scriptR

== Description ==

This program generates the run script and .INN files required to batch register new images.

Required Files

input file:

  • make_script.in - Text file containing the names of the images to batch register.

seed file:

  • make_scriptR.seed - Text file containing the register option commands for batch registering images.

processed files:

  • TESTFILES/ - Directory in which to store copies of LMRK_DISPLAY.pgm (output by register) for each image.

    /!\ register requires a number of directories and files. Refer to regiser for more information.

Output Files

make_scriptR outputs:

  • run_script.b - Run script for batch image registration.

  • .INN files - register seed file for each image.

run_script.b output:

  • .OOT files - Standard output from register for each image.

processed files outputs:

  • TESTFILES/ - A copy of LMRK_DISPLAY.pgm (output by register) is saved for each image.

  • NOMINALS/ - If the seed file includes the option to update the NOMINAL file, starting S/C and camera information will be updated. (This option is not typically selected).

  • SUMFILES/ - S/C and camera information are updated as image shifts are made.

Using make_scriptR

  1. Create Input Files

Here is a sample make_script.in file (see that entry for further information): 

 P3T11S2H0409
 P3T11S2H0410
 P3T11S2H0411
END

  • /!\ You must precede each image filename with a space.

Here is a sample make_scriptR.seed file (see that entry for further information): 

s
20
3
y
XSTOP
1
10
3
y
XSTOP
0
y
n
n
q
  1. Run make_scriptR

make_scriptR generates a .INN file for each image. It consists of the image filename followed by the register options contained in the make_scriptR.seed file.

Here is a sample .INN file for image P3T11S2H0409.INN: 

P3T11S2H0409
s                   
20                  
3                   
y                   
XSTOP               
1                   
10                  
3                   
y                   
XSTOP               
0                   
y                   
n                   
n                   
q

make_scriptR also generates the run_script.b script, which looks like this: 

rm -f P3T11S2H0409.OOT
/usr/local/bin/REGISTER < P3T11S2H0409.INN > P3T11S2H0409.OOT
cp TEMPFILE.pgm ./TESTFILES/P3T11S2H0409.pgm
rm -f P3T11S2H0410.OOT
/usr/local/bin/REGISTER < P3T11S2H0410.INN > P3T11S2H0410.OOT
cp TEMPFILE.pgm ./TESTFILES/P3T11S2H0410.pgm
rm -f P3T11S2H0411.OOT
/usr/local/bin/REGISTER < P3T11S2H0411.INN > P3T11S2H0411.OOT
cp TEMPFILE.pgm ./TESTFILES/P3T11S2H0411.pgm
  1. Batch Register Images

Here is a sample command line for running run_script.b: 

sh run_script.b

The register standard output for each image is captured in the .OOT files. The LMRKDISPLAY.pgm file output by register is copied and stored in TESTFILES/ once an image has been processed. You must review the .OOT files to ascertain the success of the batch image registration process.

  • (!) There is currently no find-nofit program for batch image registration.

(Compiled by DL)

CategoryPrograms

make_scriptR (last edited 2016-07-26 09:32:25 by BMittan)