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* rem_script.b - run script to clean out the directory of make_scriptT working files once tiling is complete and user has quality checked the resulting suite of maplets. | |
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The [[lithos]] standard output for each image is captured in the .OOT files. The user must review the .OOT files to ascertain the success of the batch image registration process, problem landmarks can be detected using the utility program [[find_nofitT]]. | or in the background: {{{ nohup sh run_script.b & }}} The [[lithos]] standard output for each image is captured in the .OOT files. == Quality Check New Maplets == The user must review the .OOT files to ascertain the success of the batch image registration process, problem landmarks can be detected using the utility program [[find_nofitT]]. == Clean Working Directory == rem_script.b can be used to clean out the directory of make_scriptT working files once tiling is complete and user has quality checked the resulting suite of maplets: {{{ rm -f *.INN rm -f *.OOT rm -f run_script* }}} |
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Make_script is the heart of the tiling process. It generates are large suite of scripts that is run (one for each landmark) and runs [[lithos]] on it. === Input - files === * [[make_scriptT.in]] - The script file that defines the landmarks and the map to use === Input - stdin === * None === Output === * run_script.b - This is the main script you run to align images to the landmarks using [[lithos]] * rem_script.b - You use then to clean out the directory of all old working files before you do your next run * aaaa.INN - A shell script that runs [[lithos]] for that specific lat/lon ---- |
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= Step1 = Set up the files for the rn = Step2 = Run and monitor ------ = Step1 = == Overview == The will use XXXXXX and XXX020.SEED to generate a suite of files to tile a bigmap. Output will be exact (diff) == Prep == Copy the reference map to XXXXXX (because Bob likes it that way) {{{ cp MAPFILES/REFMAP.MAP MAPFILES/XXXXXX.MAP }}} Add map name and seed to the top of the output from [[make_tilefile]], which should be named [[make_scriptT.in]] It should look like this: {{{ XXXXXX XXX020.SEED 50 50 100 50 150 50 200 50 250 50 300 50 350 50 400 50 450 50 500 50 550 50 600 50 ... 900 950 950 950 END }}} == Run == {{{ ~/bin/make_scriptT }}} == Output == . INN files (1 to 361) . rem_script.b . run_script.b . dsp_list.txt ------ = Step 2 = == Run == Run, just run the script to make the whole thing go (in the background) {{{ nohup sh run_script.b & }}} == Monitor == Track the progress with find_nofitT {{{ ~/bin/find_nofitT }}} If there are problems with the processing, you'll get a list of landmarks with issues {{{ just listed - no significant issue * very bad - must fix ! not too bad - should fix }}} |
make_scriptT
(Compiled by DL)
Purpose: Generates the run script and .INN files required to tile a bigmap or shape with a suite of new maplets.
Requires
make_scriptT.in - text file containing references to the bigmap and make_scriptT.seed file, and the bigmap pixel/line locations for the centers of each new maplet.
make_scriptT.seed - text file containing the lithos option commands for generating each maplet.
NB: lithos requires a number of directories and files - refer to relevant guide.
Output
make_scriptT outputs:
- run_script.b - run script for maplet creation.
- .INN files - lithos seed file for each new maplet.
- rem_script.b - run script to clean out the directory of make_scriptT working files once tiling is complete and user has quality checked the resulting suite of maplets.
run_script.b output:
- .OOT files - standard output from lithos for each new maplet.
SUMFILES/ - S/C and camera information are updated by lithos as image shifts are accepted. New landmarks and limb fits are added to the SUMFILEs;
LMKFILES/ - LMKFILES for each new maplet are created and populated by lithos.
SUMFILES/ - MAPFILES for each new maplet are created and populated by lithos.
a number of information text and display files in the working directory are modified by lithos; please refer to the relevant guide.
Using make_scriptT
There are a multitude of procedures the user should follow before running make_scriptT; please refer to the Basic_tiling 'How-To' guide.
Create Input Files
Example make_scriptT.in file (see make_scriptT.in for further details):
XXXXXX scripts/t11-10.seed 50 50 100 50 150 50 200 50 50 100 100 100 150 100 200 100 50 150 100 150 150 150 200 150 50 200 100 200 150 200 200 200 END
Example make_scriptT.seed file (see make_scriptT.seed for further details):
0.00010,49 g i a y .5 n x .025 0 a b n XXXXXX n 2 b n XXXXXX u 1 v 2 e a 0,60,.25,.25,0,3 1 0 3 n 0 y ... u 1 o RECENT y 1 o RECENT n 3 y 1, 3, 5 w i RECENT n n v 1 u 1 #v #4 o RECENT n 1 q END
Run make_scriptT
make_scriptT generates a .INN file for each new maplet. The first five lines of the .INN file (see below) create a new landmark in lithos, with a center at the correct bigmap pixel/line location or shape model lat/wlon location. The landmark, initially monikered 'a', is auto-renamed by lithos (option g) depending on its global lat/long region, for example 'EE0001'. The bigmap is referred to via a temporary file, named XXXXXX. The user must copy the current bibmap to MAPFILES/XXXXXX.MAP.
Example 001.INN file:
c a m XXXXXX 50.000000000000000 50.000000000000000 0.00010,49 g i etc ...
make_scriptT also generates the run script - run_script.b:
rm -f 001.OOT /usr/local/bin/LITHOS < 001.INN > 001.OOT cp LMRK_DISPLAY1.pgm ./TESTFILES/001.pgm cp tmpl.pgm ./TESTFILES1/001.pgm rm -f 002.OOT /usr/local/bin/LITHOS < 002.INN > 002.OOT cp LMRK_DISPLAY1.pgm ./TESTFILES/002.pgm cp tmpl.pgm ./TESTFILES1/002.pgm rm -f 003.OOT /usr/local/bin/LITHOS < 003.INN > 003.OOT cp LMRK_DISPLAY1.pgm ./TESTFILES/003.pgm cp tmpl.pgm ./TESTFILES1/003.pgm etc ...
Tile Bigmap with New Maplets
sh run_script.b
or in the background:
nohup sh run_script.b &
The lithos standard output for each image is captured in the .OOT files.
Quality Check New Maplets
The user must review the .OOT files to ascertain the success of the batch image registration process, problem landmarks can be detected using the utility program find_nofitT.
Clean Working Directory
rem_script.b can be used to clean out the directory of make_scriptT working files once tiling is complete and user has quality checked the resulting suite of maplets:
rm -f *.INN rm -f *.OOT rm -f run_script*