Differences between revisions 4 and 7 (spanning 3 versions)
Revision 4 as of 2016-02-19 09:35:35
Size: 4898
Editor: BMittan
Comment:
Revision 7 as of 2016-02-23 23:17:25
Size: 2922
Editor: EricPalmer
Comment:
Deletions are marked like this. Additions are marked like this.
Line 3: Line 3:

 (./) This is copied from working--needs to be more generic.
Line 16: Line 14:
 * You are a member of the group OREX\spc
 * You have set up a skeleton directory in the following format:
{{{
 /SPC_Test/F3G-Nav/
                   ORex/
                            DATA/
                   base/
                            IMAGEFILES/
                            SHAPEFILES/
                   lsupport/
                   orig/
                   results/
                   test/
}}}
 
Line 32: Line 16:
 * You have set up the test sub-directory following the steps in ?????  * You have set up the test sub-directory following the steps in [[Block 0]]
Line 34: Line 18:
  * Block ????
  * Block ????
  * Block ????
  * [[Block 2]]
  * [[Block 3]]
Line 39: Line 22:
 * '''testID''' - Name of the F3 test directory (for example, 'F3E-Limbs')
 * '''subTestID (if required)''' - Identifier for sub-test work (for example, 'F3G1')
 * '''bigmapInFileNm''' - Name of bigmap .in file located in /SPC_Test/F3-base/base/support/ (for example, 'TILE20')
 * '''tilingSeedFileNm''' - Name of tiling seeed file located in /SPC_Test/F3-base/base/scrits/ (for example, 'XXX020')
 * '''gSD''' - Maplet Ground Sample Distance in km (for example, '0.0002')
 * '''blockID''' - User-specified identifier for typescript textfile name (for example, 'Block-05-01-Tile-Bigmap-F3G1-20cmTiling')
 * '''bigmapName''' - Name of bigmap .in file located in /SPC_Test/F3-base/base/support/ (for example, 'TILE20')
 * '''GSD''' - Maplet Ground Sample Distance in km (for example, '0.0002')
Line 52: Line 31:
testID=F3G-Nav
#subTestID=F3G1
#subTestID=F3G2
#subTestID=F3G3
#subTestID=F3G4
#subTestID=F3G5
#subTestID=F3G6
subTestID=F3G7
#export bigmapInFileNm=TILE20
#export bigmapInFileNm=TILE10
export bigmapInFileNm=TILE05
#export tilingSeedFileNm=XXX020
#export tilingSeedFileNm=XXX010
export tilingSeedFileNm=XXX005
#export gSD=0.0002
#export gSD=0.0001
export gSD=0.00005
blockID=Block-05-01-Tile-Bigmap-${subTestID}-${bigmapInFileNm}
GSD=0.00020
bigmapName=TILE20
Line 80: Line 43:
ls -l /usr/local/bin
rm LMRKLIST1.TXT # Empties the list of new landmarks

cd scripts
ln -s XXX005.seed 0.00005.seed
ln -s XXX010.seed 0.00010.seed
ln -s XXX020.seed 0.00020.seed
cd ..
Line 85: Line 56:
echo "Bigmap .in file: support/${bigmapInFileNm}.in"
cat support/${bigmapInFileNm}.in
echo "Bigmap .in file: support/$bigmapName.in"
cat lsupport/$bigmapName.in
Line 88: Line 59:
bigmap < support/${bigmapInFileNm}.in | tee log-${bigmapInFileNm} bigmap < lsupport/$bigmapName.in
Line 98: Line 69:
echo ${bigmapInFileNm} | showmap
convert ${bigmapInFileNm}.pgm ${bigmapInFileNm}.jpg
open ${bigmapInFileNm}.jpg
echo $bigmapName | showmap
convert $bigmapName.pgm ~/send/$bigmapName.jpg
Line 106: Line 76:
cp MAPFILES/${bigmapInFileNm}.MAP MAPFILES/XXXXXX.MAP cp MAPFILES/$bigmapName.MAP MAPFILES/XXXXXX.MAP
Line 110: Line 81:
echo $gSD >> map_coverage.in echo 0 >> map_coverage.in
Line 112: Line 83:
convert coverage_m.pgm coverage_m-${bigmapInFileNm}-beforeTiling.jpg
open coverage_m-${bigmapInFileNm}-beforeTiling.jpg
convert coverage_m.pgm ~/send/$bigmapName-beforeTiling.jpg
Line 117: Line 88:
echo "scripts/${tilingSeedFileNm}.seed" >> make_scriptT.in echo "scripts/$GSD.seed" >> make_scriptT.in
Line 139: Line 110:
=== 8. Check correlation results ===
{{{
# Check results - correlation
find_nofitT | tee log-fitT-${bigmapInFileNm}
sh support/logEvalP.sh
cat logResults.txt
cat lowImg.txt
cat redo.txt
}}}
Line 149: Line 111:
=== 9. Fix uncorrelated images ===

{{{
# Fix uncorrelated images
.........
}}}

=== 10. Check tiling results ===
{{{
# Check results - tiling
map_coverage < map_coverage.in
convert coverage_m.pgm coverage_m-${bigmapInFileNm}-afterTiling.jpg
open coverage_m-${bigmapInFileNm}-afterTiling.jpg
}}}

=== 11. Fix tiling gaps ===
{{{
# Fix tiling gaps
.........
}}}

=== 12. Clean directory ===
=== 8. Clean directory ===
Line 178: Line 119:
=== 13. Complete procedure === === 9. Complete procedure ===
Line 184: Line 125:
if [ ! -d /SPC_Test/$testID/log ]; then
  mkdir /SPC_Test/$testID/log
fi
mv typescript /SPC_Test/$testID/log/log-typescript-${blockID}
mv typescript typescript-$bigmapName

Block 6B - Bigmap Tiling V0

Description

This block tiles a bigmap with a new suite of landmarks. Bigmap and maplet parameters are specified by the user, using the bigmap in files contained in /SPC_Test/F3-base/base/support/ and the lithos options contained in the seed files in /SPC_Test/F3-base/base/scripts/.

Assumptions

  • You have invoked a Bourne-Again Shell (bash) on ormacsrv1.lpl.arizona.edu
  • You have completed the processing steps in Block 1 - Setup Directory V0
  • You have set up the test sub-directory following the steps in Block 0

  • You have ingested and registered test images following the steps in:

User inputs

  • bigmapName - Name of bigmap .in file located in /SPC_Test/F3-base/base/support/ (for example, 'TILE20')

  • GSD - Maplet Ground Sample Distance in km (for example, '0.0002')

Procedure

1. Initial Inputs

# User inputs:
GSD=0.00020
bigmapName=TILE20

2. Set-up

# Set-Up
cd /SPC_Test/$testID/test/
script
date
pwd
ls -l
ls -l /usr/local/bin
rm LMRKLIST1.TXT           # Empties the list of new landmarks

cd scripts
ln -s XXX005.seed 0.00005.seed
ln -s XXX010.seed 0.00010.seed
ln -s XXX020.seed 0.00020.seed
cd ..

3. Make tiling bigmap

# Make tiling bigmap
echo "Bigmap .in file: support/$bigmapName.in"
cat lsupport/$bigmapName.in
ls -l /usr/local/bin/bigmap
bigmap < lsupport/$bigmapName.in 

4. Check resulting file

# check resulting file
## Tiling bigmap has the same name as the .in file, 
## i.e. TILE20.in, produces the tiling bigmap: TILE20
echo $bigmapName | showmap
convert $bigmapName.pgm ~/send/$bigmapName.jpg

5. Setup tiling

# Set up tiling
cp MAPFILES/$bigmapName.MAP MAPFILES/XXXXXX.MAP

ls -l /usr/local/bin/map_coverage
echo "XXXXXX" > map_coverage.in
echo 0 >> map_coverage.in
echo 0 >> map_coverage.in
map_coverage < map_coverage.in
convert coverage_m.pgm ~/send/$bigmapName-beforeTiling.jpg

echo "N" | make_tilefile | tee make_tilefile.out
sed 1d make_tilefile.out > temp.out
echo "XXXXXX" > make_scriptT.in
echo "scripts/$GSD.seed" >> make_scriptT.in
cat temp.out >> make_scriptT.in 
cat make_scriptT.in
make_scriptT
ls -l

6. Invoke tiling script

# Invoke tiling script cat INIT_LITHOS.TXT lithos -v nohup sh run_script.b &

7. Monitor progress

# Monitor progress
ls -l *.INN *.OOT
find_nofitT
sh support/logEvalP.sh

8. Clean directory

# Clean directory
sh rem_script.b
rm TESTFILES/*
rm TESTFILES1/*

9. Complete procedure

# Block Complete
exit
# Save block log
mv typescript typescript-$bigmapName


(Compiled by DL)

CategoryHowTos

Block 6B - Bigmap Tiling (last edited 2016-02-23 23:50:31 by EricPalmer)