WIKI for Bob Gaskell's StereoPC
General Info
This is an attempt to document of some of the key programs and support files for Stereo Photoclinometry. I've been taking pretty good notes, and I thought we could all share and benefit from what we each have learned. If you figure something out (or get help from Bob himself), be sure to post it. If you need help with the wiki, let me know (or just send me the info).
General_Parameters - Resolution scale, etc.
Questions_to_ask - When I talk to Bob, these are things I am wondering
Table_of_Contents_For_User's_Manual - We will come up with a table of contents for OSIRIS SPC. Here is where I will be putting my notes. Other's with suggestions are welcome. User Manual Author's Task List
Training_Notes - Eric's notes for what to introduce and how
SPC_V_and_V_testing - Directions and guideline for testing
Error_evaluation - How to evaluate things for error and consistancy
Versions
- 1.0 -- Initial version of SPC
- 2.0 -- Version of SPC with the Common library created
2.1A7 -- This is the baseline version of Gaskell's software. I has gone under SubComponent testing
3.0A0 -- These have changed required in SPC to finish the SubComponent testing. It changed regress, process_fits and geometry
- 3.0A1 -- Released by Bob in support of Dawn @ Ceres
- 3.0A1a -- Minor changes
3.0A2 -- process_fits that supports NavCam
- 3.1 -- (in progress) Will have all code improvements from Rosetta and include Polar Wobble. Will receive regression testing.
Support Tools
Support Tools - useful tools that aid the SPC process
updateDisplay - aid for landmark/maplet visualization
spc_tools - javascript suite of tools that provide a GUI for SPC
How Tos
These are the "standard" blocks (or procedures) that can be used to do the most typical SPC tasks. ||Block 1 - Setup Directory V0|| ||Block 2 - Ingest V0 ||
||Block 4 - Autoregister V0 || ||Block 5 - Iterate V0 || ||Block 6A - Lat/Lon Tiling V0|| ||Block 6B - Bigmap Tiling V0||
Programs
The follow list needs update. A full list of pages are located User Manual Author's Task List.
Lithos
lithos - aligns maplets to the current shape model and will provide slight changes to the shape (stored in MAPFILES)
lithosP - A version of lithos intended to be used in batch processing (i.e. run in parallel)
geometry - figures out a surface based on landmarks
residuals.e - figures out a surface based on landmarks
register - aligns a new image with a reference, manually
autoregister - adds groups of landmarks to an image
autoregisterP - adds groups of landmarks to an image using parallel processing
blemishes - masks regions of an image which contain blemishes due to, for example, downlink errors, bad pixels, or a cosmic ray hit.
Imager
map_coverage.e - shows the coverage that has been processed by resolution
coverage.e - shows the global coverage that has been processed by resolution
image_map_rgb.e - Renders a 3D image of a bigmap using red and blue
view_shape.e - The generates a point-of-view image of the shape model
panaroma.e - Makes a 360 degree panaroma image from a big map
surface_imager.e - Makes an image using a surface point of view from a big map
display.e - Appears to generate an image that shows the location of landmarks on it
mosaic - Creates a mosaic of images registered to the shape model
Imager_MG - How to make images from maplets
Shaper
bigmap - processes maplets to form a bigmap
spheremapB.e - This reads the Zmap files and makes the resulting map line by line.
update_infiles.e - generates a list of landmarks and headers for showing coverage
shape_info - generates DTM information
Utilities
duplicates - Generates the make_script.in file to accompany make_scriptP, comprising an ordered list of unique landmark names.
find_nofit - searches batch processing output files to identify landmarks or images which may need further work.
export.e - builds scripts to package up the new maplets/landmarks into a tar ball
importL.e - builds script to unpack maplets/landmarks and integrate into a master directory
make_lmrklistX - generates LMRKLISTX
Script Makers Overview - User guide for the script-maker program suite
make_scriptA - generates the script that batch auto registers images using autoregister
make_scriptAP - generates the script for batch autoregistering images using parallel processing using autoregisterP
make_scriptF - generic script maker for user-generated batch processing jobs.
make_scriptP - generates the script for iterating landmarks using lithosP
make_scriptR - generates the script that batch registers images using register
make_scriptT - generates the script that tiles (makes new maplets) using lithos
refresh_sumfiles.e - updates the sumfiles to match the maplets
showmap.e - generates an image (.pgm) for a specific bigmap
pr_template - (copy the codes for when making a new prog page)
make_pictlistX - Builds the file PICTLISTX.TXT which makes things run faster
process_img - Takes a list of files and creates make_sumfiles.in. Creates IMAGEFILE for each images
make_sumfiles - Computes the SUMFILE and NOMINALS
make_tilefile - Generates the pixel/line maplet-center locations required to complete the tiling of a bigmap.
Gravity
Mgrav.e - Makes MGRAV.TXT and generates gravity images based on a map or bigmap.
Sgrav.e - Makes a file called SGRAV.TXT that is like SHAPE.TXT but with extra columns for surface acceleration, potential and laplacian (just as a check). Based on a shape model. This is for a non-rotating body with GM=1.
Sacc.e - Provided the correct GM and Omega, it will use SGRAV.TXT file to create the surface acceleration.
Selv.e - Provided the correct GM and Omega, it will use SGRAV.TXT file to create the surface elevation (same as geoid).
Slap - Provided the correct GM and Omega, it will use SGRAV.TXT file to create the surface laplacian.
Spot.e - Provided the correct GM and Omega, it will use SGRAV.TXT file to create the surface potential.
Sslpa.e - ?
Directories
BIGFILES - Directory for BIGMAP LMK files
DATA - A place for the SPICE kernels
IMAGEFILES - Directory that holds the image files, .DAT
LMKFILES - Stores the actual landmarkts, .LMK
MAPFILES - Stores the maplets, .MAP
NEW_IMAGES - Directory that holds the new, and unprocessed image files (in pgm format)
NOMINALS - Directory that holds the sum files, .NOM
SHAPEFILES - Holds the different types of shapefiles
SUMFILES - Directory that holds the sum files, .SUM
TESTFILES - Directory to store display files generated during batch processing jobs.
TESTFILES1 - Directory to store display files generated during batch processing jobs.
UTILITIES - Programs that are specific for this project
Key Input Files
LMRKLIST.TXT - The full list of landmarks
PICTLIST.TXT - List of the images that are in the system
PICTLISTS.TXT - User-generated alternative list of images used by residuals and geometry
PICTLISTX.TXT - List of the images that are in the system with precomputed metadata.
BIGLIST.TXT - List of mapfiles (bigmaps) used to make a new bigmap. Generated from bigmap.e
SGRAV.TXT - produced from Sgrav.e. Similar to SHAPE.TXT with extra columns for surface acceleration, potential and laplacian (just as a check).
MGRAV.TXT - produced by Mgrav.e. It contains vector position, potential, acceleration, slope and delta elevation.
SHAPE.TXT - The shape model of the object. Done is 3 column format of vertex using x, y, z coordinates
GEOID.TXT - gives the geoid in X, Y, Z position. A 3 column file.
SHAPEC.TXT - gives the height above the surface. A 4 column file.
MOSAIC.TXT - A list of images that mosaic uses to build a moasic
make_sumfiles.in - List of new images to process
make_sumfiles.txt - SPICE references
IFRAME.TXT - Converts to J2000
Output Files
check.txt - List of landmarks and overlaps output by residuals for landmarks whose linear residual is greater than the user-specified limit.
EMPTY.TXT - lithos seed file output by residuals for batch deletion of landmarks which are not contained in any pictures or limbs.
FLATLIST.TXT - List of flat maps (landmarks containing no topography) output by residuals.
LIMINFO.TXT - Limb information output by residuals.
LMKVECS.TXT - Landmark vectors output by residuals for every landmark contained in LMRKLIST.TXT.
MAPCHK.TXT - List of maplets whose difference between predicted and observed pixel/line locations in attached images is greater than a user-specified limit, or who have two or fewer overlaps attached to them, output by residuals.
MAPRES.TXT - Maplet resolution information for maplets contained in at least one picture or limb, output by residuals.
New_Limbs.in - lithos seed file output by residuals to attach map to limbs for every landmark contained in LMRKLIST.TXT.
NEW_LIST.TXT - List output by find_nofitT of new landmarks created during batch make_scriptT tiling.
no_update.txt - List of landmarks output by residuals whose associated pictures are not listed by increasing mission time in the .LMK file.
PRUNE.TXT - List of landmarks for which the number of pictures in which they are contained exceeds the default limit of 500, or the user-specified limit, PRNLM, set within INIT_LITHOS.TXT. File output by residuals.
RANGES_SOLVED.TXT - Date and range information output by residuals for each picture listed in PICTLISTS.TXT or PICTLIST.TXT.
redo.txt - List of landmarks output by find_nofit or find-nofitP which after batch lithos or lithosP processing either terminated in error, did not correlate with at least one image, or correlated weakly with at least one image.
REMOVED.TXT - List of landmarks output by find_nofit which after batch register, autoregister, or autoregisterP processing were eliminated from at least one picture due to low or no correlation.
veto.txt - lithos seed file output by residuals to detach from landmarks and limbs a map with a linear residual greater than the user-specified limit.
Key Diagnostic Files
RESIDUALS.TXT - Errors within the map and images
INSIDE.TXT - Only the maps that are inside of the most recent bigmap created
USED_MAPS.TXT - All maps used when making a bigmap
USED_PICS.TXT - All images used when making a bigmap
PICINFO.TXT - List all the images and parameters about them
Support Files
- Usually these files are used to run batch jobs or scripts.
make_script.in - Used by various script-makers for batch jobs.
make_scriptA.seed - Seed file for make_scriptA, the script-maker for batch autoregistering new images.
- make_scriptF.in? seed? -
make_scriptP.seed - Seed file for make_scriptP, the script-maker for iterating landmarks using lithosP.
make_scriptR.seed - Seed file for make_scriptR, the script-maker for batch registering new images.
make_scriptT.in - Used by make_scriptT to build run_script.b
MAPTRANS - Diagnostic tools to visualize maplet translations.
Deprecated
view_maps.in - A list of all the maplets to be used in view_maps.e. The first line isn't read. The file should be terminated with "END"
view_maps.e - This will do "paper mache" of all the maplets listed in view_maps.in.
Help
Contact me with questions. Email: <epalmer AT SPAMFREE psi DOT edu>
Links to wiki formatting and help https://moinmo.in/HelpOnMoinWikiSyntax
Test_Files - I'm going to store the scripts here for the testing proceedures